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About CoNekT

CoNekT has been developed within the EvoRepro project and is supported primarily by ERA-CAPs and the Max Planck Society.

About TeaNekT

The development of TeaNekT was driven by the vision to allow biologists working with tea plants to tap into the vast amount of publicly available transcriptomic data. Hence, the CoNekt database framework was chosen to host this platform as it allows users to interact and perform various analyses on the data without prior experience in programming, which is often required to process and analyze raw transcriptomic data.

Publications

Related publications

• CoNekT: an open-source framework for comparative genomic and transcriptomic network analyses, S. Proost, M. Mutwil, Nucleic Acids Research (2018)
• Phylogenomic analysis of gene co-expression networks reveals evolution of functional modules, C. Ruprecht, S. Proost, M. Hernandez-Coronado, C. Ortiz-Ramirez, D. Lang, S. A. Rensing, J. D. Becker, K. Vandepoele, M. Mutwil, The Plant Journal (2017)
• Beyond genomics: studying evolution with gene networks, C. Ruprecht, N. Vaid, S. Proost, S. Persson, M. Mutwil, Trends in Plant Science (2017)
• PlaNet: Comparative Co-Expression Network Analyses for Plants, S. Proost, M.Mutwil, Plant Genomics Databases (Book Chapter) (2017)
• Tools of the trade: studying molecular networks in plants, S. Proost, M.Mutwil, Current Opinion in Plant Biology (2016)
• FamNet: A Framework to Identify Multiplied Modules Driving Pathway Expansion in Plants, C. Ruprecht, A. Mendrinna, T. Tohge, A. Sampathkumar, S. Klie, A. R. Fernie, Z. Nikoloski, S. Persson, M. Mutwil, Plant Physiology (2016)
• Elucidating gene function and function evolution through comparison of co-expression networks of plants, B. O.Hansen, N.Vaid, M. Musialak-Lange, M. Janowski, M. Mutwil, Frontiers in Plant Science (2014)
• Towards revealing the functions of all genes in plants, S. Y. Rhee, M. Mutwil, Trends in Plant Science (2013)
• PlaNet: Combined Sequence and Expression Comparisons across Plant Networks Derived from Seven Species. M. Mutwil, S. Klie, T. Tohge, F. M. Giorgi, O. Wilkins, M.M. Campbell, A.R. Fernie, B. Usadel, Z. Nikoloski, S. Persson, The Plant Cell (2011)

Links

• http://www.gene2function.de : the first version of PlaNet