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  3. Camellia sinensis var. sinensis cv. 'Echa 1'
  4. Sequence
  5. ECHA03490

ECHA03490


Description : 40S ribosomal protein S12 & original description: none


Gene families : OG0002996 (OrthoFinder) Phylogenetic Tree(s): OG0002996_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ECHA03490
Cluster HCCA: Cluster_407

Target Alias Description ECC score Gene Family Method Actions
ANJIBAICHA11903 No alias 40S ribosomal protein S12 & original description: none 0.11 OrthoFinder
CSA013803.1 CSA013803 40S ribosomal protein S12 & original description: none 0.07 OrthoFinder
CSA030434.1 CSA030434 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
FUDINGDABAI03484 No alias 40S ribosomal protein S12 & original description: none 0.09 OrthoFinder
FUDINGDABAI06986 No alias 40S ribosomal protein S12 & original description: none 0.04 OrthoFinder
GWHTACFB013744 No alias 40S ribosomal protein S12 & original description:... 0.09 OrthoFinder
GWHTACFB019379 No alias 40S ribosomal protein S12 & original description:... 0.06 OrthoFinder
HUANGJINYA03991 No alias 40S ribosomal protein S12 & original description: none 0.1 OrthoFinder
HUANGJINYA07626 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
JINXUAN04892 No alias 40S ribosomal protein S12 & original description: none 0.15 OrthoFinder
JINXUAN10245 No alias 40S ribosomal protein S12 & original description: none 0.07 OrthoFinder
LJCHANGYE06792 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
LJCHANGYE10527 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
TIEGUANYIN01985 No alias 40S ribosomal protein S12 & original description: none 0.07 OrthoFinder
TIEGUANYIN25356 No alias 40S ribosomal protein S12 & original description: none 0.11 OrthoFinder
ZHONGCHA04928 No alias 40S ribosomal protein S12 & original description: none 0.08 OrthoFinder
ZHONGCHA07768 No alias 40S ribosomal protein S12 & original description: none 0.06 OrthoFinder
ZIJUAN24869 No alias 40S ribosomal protein S12 & original description: none 0.09 OrthoFinder
ANJIBAICHA11903 No alias 40S ribosomal protein S12 & original description: none 0.11 OrthoFinder
CSA013803.1 CSA013803 40S ribosomal protein S12 & original description: none 0.07 OrthoFinder
CSA030434.1 CSA030434 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
CSS0000337.1 CSS0000337 40S ribosomal protein S12 & original description:... 0.03 OrthoFinder
CSS0019557.1 CSS0019557 40S ribosomal protein S12 & original description:... 0.07 OrthoFinder
FUDINGDABAI03484 No alias 40S ribosomal protein S12 & original description: none 0.09 OrthoFinder
FUDINGDABAI06986 No alias 40S ribosomal protein S12 & original description: none 0.04 OrthoFinder
GWHTACFB013744 No alias 40S ribosomal protein S12 & original description:... 0.09 OrthoFinder
GWHTACFB019379 No alias 40S ribosomal protein S12 & original description:... 0.06 OrthoFinder
HUANGJINYA03991 No alias 40S ribosomal protein S12 & original description: none 0.1 OrthoFinder
HUANGJINYA07626 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
JINXUAN04892 No alias 40S ribosomal protein S12 & original description: none 0.15 OrthoFinder
JINXUAN10245 No alias 40S ribosomal protein S12 & original description: none 0.07 OrthoFinder
LJCHANGYE06792 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
LJCHANGYE10527 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
TIEGUANYIN01985 No alias 40S ribosomal protein S12 & original description: none 0.07 OrthoFinder
TIEGUANYIN25356 No alias 40S ribosomal protein S12 & original description: none 0.11 OrthoFinder
ZHONGCHA04928 No alias 40S ribosomal protein S12 & original description: none 0.08 OrthoFinder
ZHONGCHA07768 No alias 40S ribosomal protein S12 & original description: none 0.06 OrthoFinder
ZIJUAN24869 No alias 40S ribosomal protein S12 & original description: none 0.09 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
CC GO:0030008 TRAPP complex IEP HCCA
CC GO:0030880 RNA polymerase complex IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
CC GO:0034719 SMN-Sm protein complex IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0051259 protein complex oligomerization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0070206 protein trimerization IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
CC GO:0140535 intracellular protein-containing complex IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 30 123
No external refs found!