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  3. Camellia sinensis var. sinensis cv. 'Echa 1'
  4. Sequence
  5. ECHA23210

ECHA23210


Description : Pentatricopeptide repeat-containing protein At3g26540 & original description: none


Gene families : OG0014912 (OrthoFinder) Phylogenetic Tree(s): OG0014912_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ECHA23210
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
GWHTACFB016015 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.07 OrthoFinder
GWHTAZTZ011654 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.08 OrthoFinder
HUANGJINYA21194 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.04 OrthoFinder
JINXUAN32962 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.04 OrthoFinder
TIEGUANYIN20062 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.03 OrthoFinder
ZHONGCHA30449 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.03 OrthoFinder
ZIJUAN18342 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.06 OrthoFinder
GWHTACFB016015 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.07 OrthoFinder
GWHTAZTZ011654 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.08 OrthoFinder
HUANGJINYA21194 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.04 OrthoFinder
JINXUAN32962 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.04 OrthoFinder
TIEGUANYIN20062 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.03 OrthoFinder
ZHONGCHA30449 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.03 OrthoFinder
ZIJUAN18342 No alias Pentatricopeptide repeat-containing protein At3g26540 &... 0.06 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009399 nitrogen fixation IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
MF GO:0030701 NAD+-dinitrogen-reductase ADP-D-ribosyltransferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0071941 nitrogen cycle metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 255 298
IPR002885 Pentatricopeptide_repeat 155 202
IPR002885 Pentatricopeptide_repeat 128 150
IPR002885 Pentatricopeptide_repeat 230 253
IPR002885 Pentatricopeptide_repeat 55 83
IPR002885 Pentatricopeptide_repeat 26 54
No external refs found!