ECHA27843

Description : Pentatricopeptide repeat-containing protein At2g03380, mitochondrial & original description: none

Gene families : OG0022317 (OrthoFinder) Phylogenetic Tree(s): OG0022317_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ECHA27843
Cluster	HCCA: Cluster_278

Target	Alias	Description	ECC score	Gene Family Method
FUDINGDABAI27408	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.11	OrthoFinder
JINXUAN31813	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.03	OrthoFinder
TIEGUANYIN18534	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.05	OrthoFinder
ZHONGCHA28646	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.02	OrthoFinder
CSS0000985.1	CSS0000985	Pentatricopeptide repeat-containing protein At2g03380,...	0.09	OrthoFinder
FUDINGDABAI27408	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.11	OrthoFinder
JINXUAN31813	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.03	OrthoFinder
TIEGUANYIN18534	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.05	OrthoFinder
ZHONGCHA28646	No alias	Pentatricopeptide repeat-containing protein At2g03380,...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
BP	GO:0006417	regulation of translation	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034248	regulation of amide metabolic process	None	Extended
MF	GO:0042802	identical protein binding	IEA	Interproscan
MF	GO:0045182	translation regulator activity	IEA	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006488	dolichol-linked oligosaccharide biosynthetic process	IEP	HCCA
BP	GO:0006490	oligosaccharide-lipid intermediate biosynthetic process	IEP	HCCA
BP	GO:0006720	isoprenoid metabolic process	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009297	pilus assembly	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
BP	GO:0016093	polyprenol metabolic process	IEP	HCCA
BP	GO:0019348	dolichol metabolic process	IEP	HCCA
BP	GO:0030030	cell projection organization	IEP	HCCA
BP	GO:0030031	cell projection assembly	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043711	pilus organization	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0051011	microtubule minus-end binding	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	418	467
IPR002885	Pentatricopeptide_repeat	293	316
IPR002885	Pentatricopeptide_repeat	596	620
IPR002885	Pentatricopeptide_repeat	321	343
IPR002885	Pentatricopeptide_repeat	393	414
IPR002885	Pentatricopeptide_repeat	495	521
IPR002885	Pentatricopeptide_repeat	192	219
IPR002885	Pentatricopeptide_repeat	220	247
IPR002885	Pentatricopeptide_repeat	524	551
IPR002885	Pentatricopeptide_repeat	558	585

External Links

No external refs found!

ECHA27843

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation