1. Home
  2. Species
  3. Camellia sinensis var. sinensis cv. 'Echa 1'
  4. Sequence
  5. ECHA33288

ECHA33288


Description : Pentatricopeptide repeat-containing protein At1g25360 & original description: none


Gene families : OG0015666 (OrthoFinder) Phylogenetic Tree(s): OG0015666_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ECHA33288
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
CSA019374.1 CSA019374 Pentatricopeptide repeat-containing protein At1g25360 &... 0.09 OrthoFinder
FUDINGDABAI46939 No alias Pentatricopeptide repeat-containing protein At1g25360 &... 0.06 OrthoFinder
HUANGJINYA46008 No alias Pentatricopeptide repeat-containing protein At1g25360 &... 0.03 OrthoFinder
TIEGUANYIN35009 No alias Pentatricopeptide repeat-containing protein At1g25360 &... 0.09 OrthoFinder
CSA019374.1 CSA019374 Pentatricopeptide repeat-containing protein At1g25360 &... 0.09 OrthoFinder
FUDINGDABAI46939 No alias Pentatricopeptide repeat-containing protein At1g25360 &... 0.06 OrthoFinder
HUANGJINYA46008 No alias Pentatricopeptide repeat-containing protein At1g25360 &... 0.03 OrthoFinder
TIEGUANYIN35009 No alias Pentatricopeptide repeat-containing protein At1g25360 &... 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0042802 identical protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0007186 G protein-coupled receptor signaling pathway IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042330 taxis IEP HCCA
MF GO:0044877 protein-containing complex binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 99 120
IPR002885 Pentatricopeptide_repeat 347 372
IPR002885 Pentatricopeptide_repeat 407 436
IPR002885 Pentatricopeptide_repeat 375 404
IPR002885 Pentatricopeptide_repeat 582 603
IPR002885 Pentatricopeptide_repeat 241 267
IPR002885 Pentatricopeptide_repeat 270 317
IPR002885 Pentatricopeptide_repeat 505 551
IPR002885 Pentatricopeptide_repeat 127 174
IPR032867 DYW_dom 678 802
No external refs found!