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  5. ECHA36676

ECHA36676


Description : Pentatricopeptide repeat-containing protein At3g18020 & original description: none


Gene families : OG0015162 (OrthoFinder) Phylogenetic Tree(s): OG0015162_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ECHA36676
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
CSA028710.1 CSA028710 Pentatricopeptide repeat-containing protein At3g18020 &... 0.03 OrthoFinder
FUDINGDABAI33773 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.07 OrthoFinder
GWHTACFB009878 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.06 OrthoFinder
GWHTAZTZ043400 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.06 OrthoFinder
TIEGUANYIN25230 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.03 OrthoFinder
ZHONGCHA36168 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.06 OrthoFinder
ZIJUAN34781 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.07 OrthoFinder
CSA028710.1 CSA028710 Pentatricopeptide repeat-containing protein At3g18020 &... 0.03 OrthoFinder
CSS0017365.1 CSS0017365 Pentatricopeptide repeat-containing protein At3g18020 &... 0.08 OrthoFinder
CSS0026236.1 CSS0026236 Pentatricopeptide repeat-containing protein At3g18020 &... 0.08 OrthoFinder
FUDINGDABAI33773 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.07 OrthoFinder
GWHTACFB009878 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.06 OrthoFinder
GWHTAZTZ043400 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.06 OrthoFinder
TIEGUANYIN25230 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.03 OrthoFinder
ZHONGCHA36168 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.06 OrthoFinder
ZIJUAN34781 No alias Pentatricopeptide repeat-containing protein At3g18020 &... 0.07 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000372 Group I intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0006935 chemotaxis IEP HCCA
BP GO:0007154 cell communication IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007268 chemical synaptic transmission IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0017053 transcription repressor complex IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0023052 signaling IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033130 acetylcholine receptor binding IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0040011 locomotion IEP HCCA
BP GO:0042330 taxis IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0043495 protein-membrane adaptor activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0098916 anterograde trans-synaptic signaling IEP HCCA
BP GO:0099536 synaptic signaling IEP HCCA
BP GO:0099537 trans-synaptic signaling IEP HCCA
CC GO:0110001 toxin-antitoxin complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 594 623
IPR002885 Pentatricopeptide_repeat 312 341
IPR002885 Pentatricopeptide_repeat 166 194
IPR002885 Pentatricopeptide_repeat 520 568
IPR002885 Pentatricopeptide_repeat 625 668
IPR002885 Pentatricopeptide_repeat 343 392
IPR002885 Pentatricopeptide_repeat 197 244
IPR002885 Pentatricopeptide_repeat 484 511
IPR002885 Pentatricopeptide_repeat 446 476
No external refs found!