ECHA39902 (VAC1, ECB2, ATECB2)

Aliases : VAC1, ECB2, ATECB2

Description : Pentatricopeptide repeat-containing protein At1g15510, chloroplastic & original description: none

Gene families : OG0008578 (OrthoFinder) Phylogenetic Tree(s): OG0008578_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ECHA39902
Cluster	HCCA: Cluster_278

Target	Alias	Description	ECC score	Gene Family Method
CSA017058.1	CSA017058, VAC1,...	Pentatricopeptide repeat-containing protein At1g15510,...	0.08	OrthoFinder
FUDINGDABAI36490	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.13	OrthoFinder
GWHTACFB013661	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.07	OrthoFinder
GWHTAZTZ006028	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.1	OrthoFinder
HUANGJINYA37527	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.05	OrthoFinder
HUANGJINYA38349	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.12	OrthoFinder
JINXUAN46330	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.02	OrthoFinder
TIEGUANYIN28191	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.04	OrthoFinder
TIEGUANYIN29656	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.06	OrthoFinder
ZHONGCHA40128	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.06	OrthoFinder
ZIJUAN46131	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.11	OrthoFinder
ZIJUAN46132	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.07	OrthoFinder
CSA017058.1	CSA017058, VAC1,...	Pentatricopeptide repeat-containing protein At1g15510,...	0.08	OrthoFinder
CSS0038176.1	CSS0038176,...	Pentatricopeptide repeat-containing protein At1g15510,...	0.07	OrthoFinder
CSS0041312.1	CSS0041312,...	Pentatricopeptide repeat-containing protein At1g15510,...	0.05	OrthoFinder
FUDINGDABAI36490	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.13	OrthoFinder
GWHTACFB013661	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.07	OrthoFinder
GWHTAZTZ006028	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.1	OrthoFinder
HUANGJINYA37527	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.05	OrthoFinder
HUANGJINYA38349	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.12	OrthoFinder
JINXUAN46330	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.02	OrthoFinder
TIEGUANYIN28191	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.04	OrthoFinder
TIEGUANYIN29656	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.06	OrthoFinder
ZHONGCHA40128	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.06	OrthoFinder
ZIJUAN46131	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.11	OrthoFinder
ZIJUAN46132	VAC1, ECB2, ATECB2	Pentatricopeptide repeat-containing protein At1g15510,...	0.07	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006417	regulation of translation	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0034248	regulation of amide metabolic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0045182	translation regulator activity	IEA	Interproscan
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000372	Group I intron splicing	IEP	HCCA
BP	GO:0000376	RNA splicing, via transesterification reactions with guanosine as nucleophile	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0009297	pilus assembly	IEP	HCCA
BP	GO:0009399	nitrogen fixation	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0016192	vesicle-mediated transport	IEP	HCCA
MF	GO:0016763	pentosyltransferase activity	IEP	HCCA
BP	GO:0030030	cell projection organization	IEP	HCCA
BP	GO:0030031	cell projection assembly	IEP	HCCA
MF	GO:0030701	NAD+-dinitrogen-reductase ADP-D-ribosyltransferase activity	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043711	pilus organization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0071941	nitrogen cycle metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	233	259
IPR002885	Pentatricopeptide_repeat	262	290
IPR002885	Pentatricopeptide_repeat	436	463
IPR002885	Pentatricopeptide_repeat	464	490
IPR002885	Pentatricopeptide_repeat	69	88
IPR032867	DYW_dom	734	857
IPR002885	Pentatricopeptide_repeat	158	205
IPR002885	Pentatricopeptide_repeat	560	608
IPR002885	Pentatricopeptide_repeat	360	408

External Links

No external refs found!

ECHA39902 (VAC1, ECB2, ATECB2)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation