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  5. ECHA43962

ECHA43962


Description : Pentatricopeptide repeat-containing protein At1g18485 & original description: none


Gene families : OG0019838 (OrthoFinder) Phylogenetic Tree(s): OG0019838_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ECHA43962
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
ANJIBAICHA48935 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.03 OrthoFinder
CSA025871.1 CSA025871 Pentatricopeptide repeat-containing protein At1g18485 &... 0.1 OrthoFinder
FUDINGDABAI39399 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.03 OrthoFinder
HUANGJINYA38398 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.02 OrthoFinder
JINXUAN41897 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.03 OrthoFinder
TIEGUANYIN28971 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.07 OrthoFinder
ZHONGCHA40390 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.03 OrthoFinder
ZIJUAN02078 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.06 OrthoFinder
ANJIBAICHA48935 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.03 OrthoFinder
CSA025871.1 CSA025871 Pentatricopeptide repeat-containing protein At1g18485 &... 0.1 OrthoFinder
CSS0025927.1 CSS0025927 Pentatricopeptide repeat-containing protein At1g18485 &... 0.04 OrthoFinder
CSS0043113.1 CSS0043113 Pentatricopeptide repeat-containing protein At1g18485 &... 0.02 OrthoFinder
FUDINGDABAI39399 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.03 OrthoFinder
HUANGJINYA38398 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.02 OrthoFinder
JINXUAN41897 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.03 OrthoFinder
TIEGUANYIN28971 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.07 OrthoFinder
ZHONGCHA40390 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.03 OrthoFinder
ZIJUAN02078 No alias Pentatricopeptide repeat-containing protein At1g18485 &... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000372 Group I intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009297 pilus assembly IEP HCCA
BP GO:0009399 nitrogen fixation IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
BP GO:0016570 histone modification IEP HCCA
BP GO:0016571 histone methylation IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
CC GO:0017053 transcription repressor complex IEP HCCA
BP GO:0018022 peptidyl-lysine methylation IEP HCCA
MF GO:0018024 obsolete histone lysine N-methyltransferase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018205 peptidyl-lysine modification IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0030030 cell projection organization IEP HCCA
BP GO:0030031 cell projection assembly IEP HCCA
MF GO:0030701 NAD+-dinitrogen-reductase ADP-D-ribosyltransferase activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0034968 histone lysine methylation IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043711 pilus organization IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0071941 nitrogen cycle metabolic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0110001 toxin-antitoxin complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 276 302
IPR002885 Pentatricopeptide_repeat 351 372
IPR002885 Pentatricopeptide_repeat 248 274
IPR002885 Pentatricopeptide_repeat 454 479
IPR002885 Pentatricopeptide_repeat 757 781
IPR002885 Pentatricopeptide_repeat 176 200
IPR002885 Pentatricopeptide_repeat 379 407
IPR002885 Pentatricopeptide_repeat 483 508
IPR032867 DYW_dom 856 978
IPR002885 Pentatricopeptide_repeat 580 628
IPR002885 Pentatricopeptide_repeat 682 728
No external refs found!