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  5. ECHA44609

ECHA44609 (EMB2453, ATPPR5)


Aliases : EMB2453, ATPPR5

Description : Pentatricopeptide repeat-containing protein At4g39620, chloroplastic & original description: none


Gene families : OG0015277 (OrthoFinder) Phylogenetic Tree(s): OG0015277_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ECHA44609
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
ANJIBAICHA47462 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.06 OrthoFinder
FUDINGDABAI38444 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.03 OrthoFinder
HUANGJINYA39714 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.04 OrthoFinder
ZIJUAN39779 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.03 OrthoFinder
ANJIBAICHA47462 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.06 OrthoFinder
FUDINGDABAI38444 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.03 OrthoFinder
HUANGJINYA39714 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.04 OrthoFinder
ZIJUAN39779 EMB2453, ATPPR5 Pentatricopeptide repeat-containing protein At4g39620,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0005739 mitochondrion IEA Interproscan
BP GO:0006886 intracellular protein transport IEA Interproscan
BP GO:0016192 vesicle-mediated transport IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005543 phospholipid binding IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport IEP HCCA
MF GO:0008289 lipid binding IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
CC GO:0030120 vesicle coat IEP HCCA
CC GO:0030127 COPII vesicle coat IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035091 phosphatidylinositol binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 350 396
IPR002885 Pentatricopeptide_repeat 172 201
IPR002885 Pentatricopeptide_repeat 422 444
IPR002885 Pentatricopeptide_repeat 278 325
IPR002885 Pentatricopeptide_repeat 203 256
No external refs found!