ECHA47570

Description : Pentatricopeptide repeat-containing protein At3g59040 & original description: none

Gene families : OG0012122 (OrthoFinder) Phylogenetic Tree(s): OG0012122_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ECHA47570
Cluster	HCCA: Cluster_278

Target	Alias	Description	ECC score	Gene Family Method
ANJIBAICHA42432	No alias	Pentatricopeptide repeat-containing protein At3g59040 &...	0.02	OrthoFinder
CSA024551.1	CSA024551	Pentatricopeptide repeat-containing protein At3g59040 &...	0.02	OrthoFinder
GWHTAZTZ000154	No alias	Pentatricopeptide repeat-containing protein At3g59040 &...	0.05	OrthoFinder
LJCHANGYE49846	No alias	Pentatricopeptide repeat-containing protein At3g59040 &...	0.02	OrthoFinder
ZHONGCHA43220	No alias	Pentatricopeptide repeat-containing protein At3g59040 &...	0.03	OrthoFinder
ZIJUAN31567	No alias	Pentatricopeptide repeat-containing protein At3g59040 &...	0.03	OrthoFinder
ANJIBAICHA42432	No alias	Pentatricopeptide repeat-containing protein At3g59040 &...	0.02	OrthoFinder
CSA024551.1	CSA024551	Pentatricopeptide repeat-containing protein At3g59040 &...	0.02	OrthoFinder
GWHTAZTZ000154	No alias	Pentatricopeptide repeat-containing protein At3g59040 &...	0.05	OrthoFinder
LJCHANGYE49846	No alias	Pentatricopeptide repeat-containing protein At3g59040 &...	0.02	OrthoFinder
ZHONGCHA43220	No alias	Pentatricopeptide repeat-containing protein At3g59040 &...	0.03	OrthoFinder
ZIJUAN31567	No alias	Pentatricopeptide repeat-containing protein At3g59040 &...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003678	DNA helicase activity	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005739	mitochondrion	IEA	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006260	DNA replication	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006888	endoplasmic reticulum to Golgi vesicle-mediated transport	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
CC	GO:0030120	vesicle coat	IEP	HCCA
CC	GO:0030127	COPII vesicle coat	IEP	HCCA
MF	GO:0032977	membrane insertase activity	IEP	HCCA
MF	GO:0140104	molecular carrier activity	IEP	HCCA
MF	GO:0140597	protein carrier chaperone	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	457	486
IPR002885	Pentatricopeptide_repeat	145	170
IPR002885	Pentatricopeptide_repeat	174	221
IPR002885	Pentatricopeptide_repeat	383	432
IPR002885	Pentatricopeptide_repeat	244	291
IPR002885	Pentatricopeptide_repeat	302	360

External Links

No external refs found!

ECHA47570

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation