ECHA49559

Description : Pentatricopeptide repeat-containing protein At3g23020 & original description: none

Gene families : OG0015658 (OrthoFinder) Phylogenetic Tree(s): OG0015658_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ECHA49559
Cluster	HCCA: Cluster_278

Target	Alias	Description	ECC score	Gene Family Method
CSA032465.1	CSA032465	Pentatricopeptide repeat-containing protein At3g23020 &...	0.12	OrthoFinder
FUDINGDABAI42454	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.09	OrthoFinder
GWHTACFB000076	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.04	OrthoFinder
GWHTAZTZ000219	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.04	OrthoFinder
HUANGJINYA41445	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.04	OrthoFinder
JINXUAN51046	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.03	OrthoFinder
LJCHANGYE50478	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.02	OrthoFinder
TIEGUANYIN32161	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.05	OrthoFinder
ZHONGCHA47441	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.02	OrthoFinder
ZIJUAN41909	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.04	OrthoFinder
CSA032465.1	CSA032465	Pentatricopeptide repeat-containing protein At3g23020 &...	0.12	OrthoFinder
CSS0026566.1	CSS0026566	Pentatricopeptide repeat-containing protein At3g23020 &...	0.05	OrthoFinder
CSS0032076.1	CSS0032076	Pentatricopeptide repeat-containing protein At3g23020 &...	0.02	OrthoFinder
FUDINGDABAI42454	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.09	OrthoFinder
GWHTACFB000076	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.04	OrthoFinder
GWHTAZTZ000219	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.04	OrthoFinder
HUANGJINYA41445	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.04	OrthoFinder
JINXUAN51046	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.03	OrthoFinder
LJCHANGYE50478	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.02	OrthoFinder
TIEGUANYIN32161	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.05	OrthoFinder
ZHONGCHA47441	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.02	OrthoFinder
ZIJUAN41909	No alias	Pentatricopeptide repeat-containing protein At3g23020 &...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006417	regulation of translation	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010608	post-transcriptional regulation of gene expression	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0034248	regulation of amide metabolic process	None	Extended
MF	GO:0045182	translation regulator activity	IEA	Interproscan
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051246	regulation of protein metabolic process	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000372	Group I intron splicing	IEP	HCCA
BP	GO:0000376	RNA splicing, via transesterification reactions with guanosine as nucleophile	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
BP	GO:0007154	cell communication	IEP	HCCA
BP	GO:0007267	cell-cell signaling	IEP	HCCA
BP	GO:0007268	chemical synaptic transmission	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009297	pilus assembly	IEP	HCCA
CC	GO:0017053	transcription repressor complex	IEP	HCCA
BP	GO:0023052	signaling	IEP	HCCA
BP	GO:0030030	cell projection organization	IEP	HCCA
BP	GO:0030031	cell projection assembly	IEP	HCCA
MF	GO:0030674	protein-macromolecule adaptor activity	IEP	HCCA
MF	GO:0033130	acetylcholine receptor binding	IEP	HCCA
MF	GO:0042802	identical protein binding	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
MF	GO:0043495	protein-membrane adaptor activity	IEP	HCCA
BP	GO:0043711	pilus organization	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
MF	GO:0051011	microtubule minus-end binding	IEP	HCCA
MF	GO:0060090	molecular adaptor activity	IEP	HCCA
BP	GO:0098916	anterograde trans-synaptic signaling	IEP	HCCA
BP	GO:0099536	synaptic signaling	IEP	HCCA
BP	GO:0099537	trans-synaptic signaling	IEP	HCCA
CC	GO:0110001	toxin-antitoxin complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	541	589
IPR002885	Pentatricopeptide_repeat	407	450
IPR002885	Pentatricopeptide_repeat	335	378
IPR002885	Pentatricopeptide_repeat	788	828
IPR002885	Pentatricopeptide_repeat	205	252
IPR002885	Pentatricopeptide_repeat	601	659
IPR002885	Pentatricopeptide_repeat	720	747
IPR002885	Pentatricopeptide_repeat	277	301
IPR002885	Pentatricopeptide_repeat	684	712
IPR002885	Pentatricopeptide_repeat	757	783

External Links

No external refs found!

ECHA49559

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation