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  3. Camellia sinensis var. sinensis cv. 'Huangjinya'
  4. Sequence
  5. HUANGJINYA03991

HUANGJINYA03991


Description : 40S ribosomal protein S12 & original description: none


Gene families : OG0002996 (OrthoFinder) Phylogenetic Tree(s): OG0002996_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: HUANGJINYA03991
Cluster HCCA: Cluster_45

Target Alias Description ECC score Gene Family Method Actions
ANJIBAICHA11903 No alias 40S ribosomal protein S12 & original description: none 0.14 OrthoFinder
CSA030434.1 CSA030434 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
CSA033673.1 CSA033673 40S ribosomal protein S12 & original description: none 0.08 OrthoFinder
ECHA03490 No alias 40S ribosomal protein S12 & original description: none 0.1 OrthoFinder
ECHA06774 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
FUDINGDABAI03484 No alias 40S ribosomal protein S12 & original description: none 0.19 OrthoFinder
FUDINGDABAI06986 No alias 40S ribosomal protein S12 & original description: none 0.04 OrthoFinder
GWHTACFB013744 No alias 40S ribosomal protein S12 & original description:... 0.18 OrthoFinder
GWHTACFB019379 No alias 40S ribosomal protein S12 & original description:... 0.03 OrthoFinder
JINXUAN04892 No alias 40S ribosomal protein S12 & original description: none 0.11 OrthoFinder
JINXUAN10245 No alias 40S ribosomal protein S12 & original description: none 0.11 OrthoFinder
LJCHANGYE06792 No alias 40S ribosomal protein S12 & original description: none 0.09 OrthoFinder
LJCHANGYE10527 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
TIEGUANYIN01985 No alias 40S ribosomal protein S12 & original description: none 0.05 OrthoFinder
TIEGUANYIN25356 No alias 40S ribosomal protein S12 & original description: none 0.09 OrthoFinder
ZHONGCHA04928 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ZIJUAN24869 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ZIJUAN53081 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ANJIBAICHA11903 No alias 40S ribosomal protein S12 & original description: none 0.14 OrthoFinder
CSA030434.1 CSA030434 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
CSA033673.1 CSA033673 40S ribosomal protein S12 & original description: none 0.08 OrthoFinder
CSS0000337.1 CSS0000337 40S ribosomal protein S12 & original description:... 0.09 OrthoFinder
CSS0019557.1 CSS0019557 40S ribosomal protein S12 & original description:... 0.14 OrthoFinder
ECHA03490 No alias 40S ribosomal protein S12 & original description: none 0.1 OrthoFinder
ECHA06774 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
FUDINGDABAI03484 No alias 40S ribosomal protein S12 & original description: none 0.19 OrthoFinder
FUDINGDABAI06986 No alias 40S ribosomal protein S12 & original description: none 0.04 OrthoFinder
GWHTACFB013744 No alias 40S ribosomal protein S12 & original description:... 0.18 OrthoFinder
GWHTACFB019379 No alias 40S ribosomal protein S12 & original description:... 0.03 OrthoFinder
JINXUAN04892 No alias 40S ribosomal protein S12 & original description: none 0.11 OrthoFinder
JINXUAN10245 No alias 40S ribosomal protein S12 & original description: none 0.11 OrthoFinder
LJCHANGYE06792 No alias 40S ribosomal protein S12 & original description: none 0.09 OrthoFinder
LJCHANGYE10527 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
TIEGUANYIN01985 No alias 40S ribosomal protein S12 & original description: none 0.05 OrthoFinder
TIEGUANYIN25356 No alias 40S ribosomal protein S12 & original description: none 0.09 OrthoFinder
ZHONGCHA04928 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ZIJUAN24869 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ZIJUAN53081 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010629 negative regulation of gene expression IEP HCCA
BP GO:0019048 modulation by virus of host process IEP HCCA
BP GO:0019054 modulation by virus of host cellular process IEP HCCA
BP GO:0019056 modulation by virus of host transcription IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0035821 modulation of process of another organism IEP HCCA
BP GO:0039653 suppression by virus of host transcription IEP HCCA
BP GO:0039656 modulation by virus of host gene expression IEP HCCA
BP GO:0039657 suppression by virus of host gene expression IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044003 modulation by symbiont of host process IEP HCCA
BP GO:0044068 modulation by symbiont of host cellular process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0052026 modulation by symbiont of host transcription IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071824 protein-DNA complex organization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 30 123
No external refs found!