1. Home
  2. Species
  3. Camellia sinensis var. sinensis cv. 'Huangjinya'
  4. Sequence
  5. HUANGJINYA32371

HUANGJINYA32371 (RACK1C_AT)


Aliases : RACK1C_AT

Description : Guanine nucleotide-binding protein subunit beta-like protein & original description: none


Gene families : OG0007764 (OrthoFinder) Phylogenetic Tree(s): OG0007764_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: HUANGJINYA32371
Cluster HCCA: Cluster_68

Target Alias Description ECC score Gene Family Method Actions
ANJIBAICHA42750 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
CSA002052.1 RACK1C_AT, CSA002052 Guanine nucleotide-binding protein subunit beta-like... 0.09 OrthoFinder
CSA004501.1 CSA004501 Guanine nucleotide-binding protein subunit beta-like... 0.12 OrthoFinder
ECHA35994 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.04 OrthoFinder
GWHTACFB014237 No alias Guanine nucleotide-binding protein subunit beta-like... 0.18 OrthoFinder
GWHTAZTZ005192 No alias Guanine nucleotide-binding protein subunit beta-like... 0.02 OrthoFinder
GWHTAZTZ043381 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.07 OrthoFinder
JINXUAN37443 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.15 OrthoFinder
LJCHANGYE38477 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.05 OrthoFinder
TIEGUANYIN23329 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.02 OrthoFinder
ZHONGCHA36730 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
ZIJUAN35214 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
ANJIBAICHA42750 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
CSA002052.1 RACK1C_AT, CSA002052 Guanine nucleotide-binding protein subunit beta-like... 0.09 OrthoFinder
CSA004501.1 CSA004501 Guanine nucleotide-binding protein subunit beta-like... 0.12 OrthoFinder
CSS0022025.1 RACK1C_AT, CSS0022025 Guanine nucleotide-binding protein subunit beta-like... 0.02 OrthoFinder
CSS0043545.1 CSS0043545, RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
ECHA35994 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.04 OrthoFinder
GWHTACFB014237 No alias Guanine nucleotide-binding protein subunit beta-like... 0.18 OrthoFinder
GWHTAZTZ005192 No alias Guanine nucleotide-binding protein subunit beta-like... 0.02 OrthoFinder
GWHTAZTZ043381 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.07 OrthoFinder
JINXUAN37443 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.15 OrthoFinder
LJCHANGYE38477 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.05 OrthoFinder
TIEGUANYIN23329 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.02 OrthoFinder
ZHONGCHA36730 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
ZIJUAN35214 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000315 organellar large ribosomal subunit IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005762 mitochondrial large ribosomal subunit IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
BP GO:0022618 protein-RNA complex assembly IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
MF GO:0070034 telomerase RNA binding IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 protein-RNA complex organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0106370 protein-L-histidine N-pros-methyltransferase activity IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1904868 telomerase catalytic core complex assembly IEP HCCA
BP GO:1905323 telomerase holoenzyme complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 100 133
IPR001680 WD40_repeat 300 323
IPR001680 WD40_repeat 228 261
IPR001680 WD40_repeat 187 221
IPR001680 WD40_repeat 9 43
IPR001680 WD40_repeat 56 91
IPR001680 WD40_repeat 146 179
No external refs found!