JINXUAN01396 (PHYC)

Aliases : PHYC

Description : Phytochrome C & original description: none

Gene families : OG0013334 (OrthoFinder) Phylogenetic Tree(s): OG0013334_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: JINXUAN01396
Cluster	HCCA: Cluster_498

Target	Alias	Description	ECC score	Gene Family Method
CSA005793.1	CSA005793, PHYC	Phytochrome C & original description: none	0.03	OrthoFinder
ECHA01861	PHYC	Phytochrome C & original description: none	0.07	OrthoFinder
FUDINGDABAI02172	PHYC	Phytochrome C & original description: none	0.02	OrthoFinder
GWHTACFB018713	PHYC	Phytochrome C & original description: Protein=GWHPACFB018713	0.05	OrthoFinder
HUANGJINYA02559	PHYC	Phytochrome C & original description: none	0.03	OrthoFinder
CSA005793.1	CSA005793, PHYC	Phytochrome C & original description: none	0.03	OrthoFinder
ECHA01861	PHYC	Phytochrome C & original description: none	0.07	OrthoFinder
FUDINGDABAI02172	PHYC	Phytochrome C & original description: none	0.02	OrthoFinder
GWHTACFB018713	PHYC	Phytochrome C & original description: Protein=GWHPACFB018713	0.05	OrthoFinder
HUANGJINYA02559	PHYC	Phytochrome C & original description: none	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000155	phosphorelay sensor kinase activity	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004672	protein kinase activity	None	Extended
MF	GO:0004673	protein histidine kinase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009581	detection of external stimulus	None	Extended
BP	GO:0009582	detection of abiotic stimulus	None	Extended
BP	GO:0009583	detection of light stimulus	None	Extended
BP	GO:0009584	detection of visible light	IEA	Interproscan
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
MF	GO:0016301	kinase activity	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	None	Extended
MF	GO:0016775	phosphotransferase activity, nitrogenous group as acceptor	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051606	detection of stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
MF	GO:0140299	small molecule sensor activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000123	histone acetyltransferase complex	IEP	HCCA
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
CC	GO:0000782	telomere cap complex	IEP	HCCA
CC	GO:0000783	nuclear telomere cap complex	IEP	HCCA
MF	GO:0000981	DNA-binding transcription factor activity, RNA polymerase II-specific	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003690	double-stranded DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004879	nuclear receptor activity	IEP	HCCA
MF	GO:0005496	steroid binding	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005669	transcription factor TFIID complex	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005743	mitochondrial inner membrane	IEP	HCCA
BP	GO:0006298	mismatch repair	IEP	HCCA
MF	GO:0008716	D-alanine-D-alanine ligase activity	IEP	HCCA
BP	GO:0009755	hormone-mediated signaling pathway	IEP	HCCA
MF	GO:0016879	ligase activity, forming carbon-nitrogen bonds	IEP	HCCA
MF	GO:0016881	acid-amino acid ligase activity	IEP	HCCA
CC	GO:0019866	organelle inner membrane	IEP	HCCA
BP	GO:0030518	intracellular steroid hormone receptor signaling pathway	IEP	HCCA
BP	GO:0030521	androgen receptor signaling pathway	IEP	HCCA
BP	GO:0030522	intracellular receptor signaling pathway	IEP	HCCA
MF	GO:0030983	mismatched DNA binding	IEP	HCCA
CC	GO:0031248	protein acetyltransferase complex	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0032993	protein-DNA complex	IEP	HCCA
MF	GO:0038023	signaling receptor activity	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0060089	molecular transducer activity	IEP	HCCA
CC	GO:0070461	SAGA-type complex	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0098531	ligand-activated transcription factor activity	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
CC	GO:1902493	acetyltransferase complex	IEP	HCCA
CC	GO:1990879	CST complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003594	HATPase_C	1003	1111
IPR013767	PAS_fold	747	869
IPR013767	PAS_fold	617	731
IPR013654	PAS_2	71	187
IPR003018	GAF	221	399
IPR013515	Phytochrome_cen-reg	412	585

External Links

No external refs found!

JINXUAN01396 (PHYC)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation