JINXUAN62580 (BUM1, SHL, STM, WAM, WAM1, BUM)

Aliases : BUM1, SHL, STM, WAM, WAM1, BUM

Description : Homeobox protein SBH1 & original description: none

Gene families : OG0006273 (OrthoFinder) Phylogenetic Tree(s): OG0006273_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: JINXUAN62580
Cluster	HCCA: Cluster_39

Target	Alias	Description	ECC score	Gene Family Method
FUDINGDABAI55390	BUM1, SHL, STM,...	Homeobox protein SBH1 & original description: none	0.07	OrthoFinder
GWHTACFB022749	BUM1, STM, WAM,...	Homeobox protein SBH1 & original description:...	0.07	OrthoFinder
GWHTAZTZ024035	BUM1, STM, WAM1,...	Homeobox protein SBH1 & original description:...	0.08	OrthoFinder
GWHTAZTZ025297	BUM1, STM, WAM1,...	Homeobox protein SBH1 & original description:...	0.09	OrthoFinder
HUANGJINYA54178	BUM1, STM, SHL,...	Homeobox protein SBH1 & original description: none	0.06	OrthoFinder
TIEGUANYIN42773	BUM1, SHL, STM,...	Homeobox protein SBH1 & original description: none	0.03	OrthoFinder
TIEGUANYIN43991	BUM1, WAM, BUM,...	Homeobox protein SBH1 & original description: none	0.06	OrthoFinder
ZHONGCHA58817	BUM1, SHL, STM,...	Homeobox protein SBH1 & original description: none	0.05	OrthoFinder
ZHONGCHA59910	BUM1, SHL, STM,...	Homeobox protein SBH1 & original description: none	0.05	OrthoFinder
ZIJUAN32844	BUM1, SHL, STM,...	Homeobox protein SBH1 & original description: none	0.03	OrthoFinder
CSS0026319.1	BUM, WAM1,...	Homeobox protein SBH1 & original description: gene=CSS0026319	0.05	OrthoFinder
FUDINGDABAI55390	BUM1, SHL, STM,...	Homeobox protein SBH1 & original description: none	0.07	OrthoFinder
GWHTACFB022749	BUM1, STM, WAM,...	Homeobox protein SBH1 & original description:...	0.07	OrthoFinder
GWHTAZTZ024035	BUM1, STM, WAM1,...	Homeobox protein SBH1 & original description:...	0.08	OrthoFinder
GWHTAZTZ025297	BUM1, STM, WAM1,...	Homeobox protein SBH1 & original description:...	0.09	OrthoFinder
HUANGJINYA54178	BUM1, STM, SHL,...	Homeobox protein SBH1 & original description: none	0.06	OrthoFinder
TIEGUANYIN42773	BUM1, SHL, STM,...	Homeobox protein SBH1 & original description: none	0.03	OrthoFinder
TIEGUANYIN43991	BUM1, WAM, BUM,...	Homeobox protein SBH1 & original description: none	0.06	OrthoFinder
ZHONGCHA58817	BUM1, SHL, STM,...	Homeobox protein SBH1 & original description: none	0.05	OrthoFinder
ZHONGCHA59910	BUM1, SHL, STM,...	Homeobox protein SBH1 & original description: none	0.05	OrthoFinder
ZIJUAN32844	BUM1, SHL, STM,...	Homeobox protein SBH1 & original description: none	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003972	RNA ligase (ATP) activity	IEP	HCCA
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	HCCA
MF	GO:0005261	monoatomic cation channel activity	IEP	HCCA
MF	GO:0005267	potassium channel activity	IEP	HCCA
CC	GO:0005618	cell wall	IEP	HCCA
CC	GO:0005741	mitochondrial outer membrane	IEP	HCCA
BP	GO:0006073	obsolete cellular glucan metabolic process	IEP	HCCA
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0006835	dicarboxylic acid transport	IEP	HCCA
BP	GO:0006886	intracellular protein transport	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
MF	GO:0008452	RNA ligase activity	IEP	HCCA
BP	GO:0009141	nucleoside triphosphate metabolic process	IEP	HCCA
BP	GO:0009143	nucleoside triphosphate catabolic process	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0015079	potassium ion transmembrane transporter activity	IEP	HCCA
BP	GO:0015711	organic anion transport	IEP	HCCA
BP	GO:0015740	C4-dicarboxylate transport	IEP	HCCA
BP	GO:0015743	malate transport	IEP	HCCA
BP	GO:0015849	organic acid transport	IEP	HCCA
CC	GO:0016020	membrane	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016762	xyloglucan:xyloglucosyl transferase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
CC	GO:0019867	outer membrane	IEP	HCCA
CC	GO:0030312	external encapsulating structure	IEP	HCCA
CC	GO:0031090	organelle membrane	IEP	HCCA
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	HCCA
CC	GO:0031966	mitochondrial membrane	IEP	HCCA
CC	GO:0031968	organelle outer membrane	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
MF	GO:0043565	sequence-specific DNA binding	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
BP	GO:0046907	intracellular transport	IEP	HCCA
BP	GO:0046942	carboxylic acid transport	IEP	HCCA
MF	GO:0046983	protein dimerization activity	IEP	HCCA
MF	GO:0047429	nucleoside triphosphate diphosphatase activity	IEP	HCCA
CC	GO:0048046	apoplast	IEP	HCCA
BP	GO:0048583	regulation of response to stimulus	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0051649	establishment of localization in cell	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA
BP	GO:0080134	regulation of response to stress	IEP	HCCA
CC	GO:0098588	bounding membrane of organelle	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:1901031	regulation of response to reactive oxygen species	IEP	HCCA
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA
BP	GO:1902882	regulation of response to oxidative stress	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005539	ELK_dom	217	238
IPR008422	Homeobox_KN_domain	257	296
IPR005541	KNOX2	138	185
IPR005540	KNOX1	90	128

External Links

No external refs found!

JINXUAN62580 (BUM1, SHL, STM, WAM, WAM1, BUM)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation