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  3. Camellia sinensis var. sinensis cv. 'Tieguanyin'
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  5. TIEGUANYIN04434

TIEGUANYIN04434


Description : Increased DNA methylation 1 & original description: none


Gene families : OG0006948 (OrthoFinder) Phylogenetic Tree(s): OG0006948_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TIEGUANYIN04434
Cluster HCCA: Cluster_485

Target Alias Description ECC score Gene Family Method Actions
ECHA12292 No alias Increased DNA methylation 1 & original description: none 0.04 OrthoFinder
FUDINGDABAI09352 No alias Increased DNA methylation 1 & original description: none 0.06 OrthoFinder
HUANGJINYA11740 No alias Increased DNA methylation 1 & original description: none 0.04 OrthoFinder
CSS0035748.2 CSS0035748 Increased DNA methylation 1 & original description:... 0.02 OrthoFinder
ECHA12292 No alias Increased DNA methylation 1 & original description: none 0.04 OrthoFinder
FUDINGDABAI09352 No alias Increased DNA methylation 1 & original description: none 0.06 OrthoFinder
HUANGJINYA11740 No alias Increased DNA methylation 1 & original description: none 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006891 intra-Golgi vesicle-mediated transport IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 DNA damage response IEP HCCA
CC GO:0017119 Golgi transport complex IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
InterPro domains Description Start Stop
IPR032308 TDBD 553 601
IPR032308 TDBD 273 328
IPR019787 Znf_PHD-finger 620 662
No external refs found!