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  3. Camellia sinensis var. sinensis cv. 'Tieguanyin'
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  5. TIEGUANYIN23329

TIEGUANYIN23329 (RACK1C_AT)


Aliases : RACK1C_AT

Description : Guanine nucleotide-binding protein subunit beta-like protein & original description: none


Gene families : OG0007764 (OrthoFinder) Phylogenetic Tree(s): OG0007764_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TIEGUANYIN23329
Cluster HCCA: Cluster_293

Target Alias Description ECC score Gene Family Method Actions
CSA002052.1 RACK1C_AT, CSA002052 Guanine nucleotide-binding protein subunit beta-like... 0.04 OrthoFinder
CSA004501.1 CSA004501 Guanine nucleotide-binding protein subunit beta-like... 0.06 OrthoFinder
GWHTACFB014237 No alias Guanine nucleotide-binding protein subunit beta-like... 0.07 OrthoFinder
GWHTAZTZ005192 No alias Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
HUANGJINYA32371 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.02 OrthoFinder
ZHONGCHA36730 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.04 OrthoFinder
CSA002052.1 RACK1C_AT, CSA002052 Guanine nucleotide-binding protein subunit beta-like... 0.04 OrthoFinder
CSA004501.1 CSA004501 Guanine nucleotide-binding protein subunit beta-like... 0.06 OrthoFinder
CSS0022025.1 RACK1C_AT, CSS0022025 Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
CSS0037013.1 CSS0037013, RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
CSS0043545.1 CSS0043545, RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.04 OrthoFinder
GWHTACFB014237 No alias Guanine nucleotide-binding protein subunit beta-like... 0.07 OrthoFinder
GWHTAZTZ005192 No alias Guanine nucleotide-binding protein subunit beta-like... 0.03 OrthoFinder
HUANGJINYA32371 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.02 OrthoFinder
ZHONGCHA36730 RACK1C_AT Guanine nucleotide-binding protein subunit beta-like... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0000387 spliceosomal snRNP assembly IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0003924 GTPase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022618 protein-RNA complex assembly IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0071826 protein-RNA complex organization IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0090729 toxin activity IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 100 133
IPR001680 WD40_repeat 300 323
IPR001680 WD40_repeat 228 261
IPR001680 WD40_repeat 187 221
IPR001680 WD40_repeat 9 43
IPR001680 WD40_repeat 56 91
IPR001680 WD40_repeat 146 179
No external refs found!