1. Home
  2. Species
  3. Camellia sinensis var. sinensis cv. 'Tieguanyin'
  4. Sequence
  5. TIEGUANYIN29627

TIEGUANYIN29627


Description : DEAD-box ATP-dependent RNA helicase 16 & original description: none


Gene families : OG0012332 (OrthoFinder) Phylogenetic Tree(s): OG0012332_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TIEGUANYIN29627
Cluster HCCA: Cluster_278

Target Alias Description ECC score Gene Family Method Actions
FUDINGDABAI40670 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.11 OrthoFinder
GWHTACFB014778 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.08 OrthoFinder
GWHTAZTZ004468 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.08 OrthoFinder
HUANGJINYA38179 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.03 OrthoFinder
LJCHANGYE46936 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.06 OrthoFinder
ZHONGCHA40143 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.05 OrthoFinder
ZIJUAN07086 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.03 OrthoFinder
CSS0045534.1 CSS0045534 DEAD-box ATP-dependent RNA helicase 16 & original... 0.07 OrthoFinder
FUDINGDABAI40670 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.11 OrthoFinder
GWHTACFB014778 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.08 OrthoFinder
GWHTAZTZ004468 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.08 OrthoFinder
HUANGJINYA38179 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.03 OrthoFinder
LJCHANGYE46936 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.06 OrthoFinder
ZHONGCHA40143 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.05 OrthoFinder
ZIJUAN07086 No alias DEAD-box ATP-dependent RNA helicase 16 & original... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005102 signaling receptor binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000154 rRNA modification IEP HCCA
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022613 ribonucleoprotein complex biogenesis IEP HCCA
CC GO:0030684 preribosome IEP HCCA
BP GO:0031167 rRNA methylation IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0042254 ribosome biogenesis IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044085 cellular component biogenesis IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0070037 rRNA (pseudouridine) methyltransferase activity IEP HCCA
BP GO:0070475 rRNA base methylation IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001650 Helicase_C 264 406
IPR011545 DEAD/DEAH_box_helicase_dom 48 225
No external refs found!