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  5. TIEGUANYIN40955

TIEGUANYIN40955


Description : Heterogeneous nuclear ribonucleoprotein 1 & original description: none


Gene families : OG0001889 (OrthoFinder) Phylogenetic Tree(s): OG0001889_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TIEGUANYIN40955
Cluster HCCA: Cluster_407

Target Alias Description ECC score Gene Family Method Actions
CSA029626.1 CSA029626 Heterogeneous nuclear ribonucleoprotein 1 & original... 0.03 OrthoFinder
CSA029626.1 CSA029626 Heterogeneous nuclear ribonucleoprotein 1 & original... 0.03 OrthoFinder
CSS0036661.2 CSS0036661 Heterogeneous nuclear ribonucleoprotein 1 & original... 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000172 ribonuclease MRP complex IEP HCCA
BP GO:0000966 RNA 5'-end processing IEP HCCA
BP GO:0001682 tRNA 5'-leader removal IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
CC GO:0005655 nucleolar ribonuclease P complex IEP HCCA
CC GO:0005732 sno(s)RNA-containing ribonucleoprotein complex IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005777 peroxisome IEP HCCA
BP GO:0006366 transcription by RNA polymerase II IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0008053 mitochondrial fusion IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
CC GO:0019028 viral capsid IEP HCCA
CC GO:0019031 viral envelope IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
CC GO:0030677 ribonuclease P complex IEP HCCA
CC GO:0030681 multimeric ribonuclease P complex IEP HCCA
CC GO:0031469 bacterial microcompartment IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
CC GO:0036338 viral membrane IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
CC GO:0042579 microbody IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
BP GO:0099116 tRNA 5'-end processing IEP HCCA
CC GO:1902555 endoribonuclease complex IEP HCCA
CC GO:1905348 endonuclease complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 8 74
IPR000504 RRM_dom 113 171
No external refs found!