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  3. Camellia sinensis var. sinensis cv. 'Tieguanyin'
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  5. TIEGUANYIN47704

TIEGUANYIN47704 (EMB2296)


Aliases : EMB2296

Description : 60S ribosomal protein L8 & original description: none


Gene families : OG0003657 (OrthoFinder) Phylogenetic Tree(s): OG0003657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: TIEGUANYIN47704
Cluster HCCA: Cluster_407

Target Alias Description ECC score Gene Family Method Actions
FUDINGDABAI16079 EMB2296 60S ribosomal protein L8 & original description: none 0.08 OrthoFinder
FUDINGDABAI60579 EMB2296 60S ribosomal protein L8 & original description: none 0.04 OrthoFinder
GWHTACFB031506 EMB2296 60S ribosomal protein L8 & original description:... 0.09 OrthoFinder
HUANGJINYA01969 EMB2296 60S ribosomal protein L8 & original description: none 0.08 OrthoFinder
HUANGJINYA14941 EMB2296 60S ribosomal protein L8 & original description: none 0.05 OrthoFinder
JINXUAN03341 EMB2296 60S ribosomal protein L8 & original description: none 0.03 OrthoFinder
JINXUAN15967 EMB2296 60S ribosomal protein L8 & original description: none 0.06 OrthoFinder
LJCHANGYE04501 EMB2296 60S ribosomal protein L8 & original description: none 0.04 OrthoFinder
ZHONGCHA03693 EMB2296 60S ribosomal protein L8 & original description: none 0.03 OrthoFinder
ZHONGCHA17185 EMB2296 60S ribosomal protein L8 & original description: none 0.03 OrthoFinder
CSS0048258.1 CSS0048258, EMB2296 60S ribosomal protein L8 & original description: gene=CSS0048258 0.07 OrthoFinder
FUDINGDABAI16079 EMB2296 60S ribosomal protein L8 & original description: none 0.08 OrthoFinder
FUDINGDABAI60579 EMB2296 60S ribosomal protein L8 & original description: none 0.04 OrthoFinder
GWHTACFB031506 EMB2296 60S ribosomal protein L8 & original description:... 0.09 OrthoFinder
HUANGJINYA01969 EMB2296 60S ribosomal protein L8 & original description: none 0.08 OrthoFinder
HUANGJINYA14941 EMB2296 60S ribosomal protein L8 & original description: none 0.05 OrthoFinder
JINXUAN03341 EMB2296 60S ribosomal protein L8 & original description: none 0.03 OrthoFinder
JINXUAN15967 EMB2296 60S ribosomal protein L8 & original description: none 0.06 OrthoFinder
LJCHANGYE04501 EMB2296 60S ribosomal protein L8 & original description: none 0.04 OrthoFinder
ZHONGCHA03693 EMB2296 60S ribosomal protein L8 & original description: none 0.03 OrthoFinder
ZHONGCHA17185 EMB2296 60S ribosomal protein L8 & original description: none 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006091 generation of precursor metabolites and energy IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008172 S-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009061 anaerobic respiration IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
BP GO:0015947 methane metabolic process IEP HCCA
BP GO:0015948 methanogenesis IEP HCCA
BP GO:0015975 energy derivation by oxidation of reduced inorganic compounds IEP HCCA
BP GO:0015980 energy derivation by oxidation of organic compounds IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
MF GO:0030269 tetrahydromethanopterin S-methyltransferase activity IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0031469 bacterial microcompartment IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
MF GO:0042086 5-methyl-5,6,7,8-tetrahydromethanopterin-dependent methyltransferase activity IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043446 cellular alkane metabolic process IEP HCCA
BP GO:0043447 alkane biosynthetic process IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0045333 cellular respiration IEP HCCA
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0120251 hydrocarbon biosynthetic process IEP HCCA
BP GO:0120252 hydrocarbon metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 123 249
IPR022666 Rbsml_prot_L2_RNA-bd_dom 38 114
No external refs found!