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  5. CSA000271.1

CSA000271.1 (CRR2, CSA000271)


Aliases : CRR2, CSA000271

Description : Pentatricopeptide repeat-containing protein At3g12770 & original description: none


Gene families : OG0010108 (OrthoFinder) Phylogenetic Tree(s): OG0010108_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CSA000271.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
FUDINGDABAI51133 CRR2 Pentatricopeptide repeat-containing protein At3g12770 &... 0.04 OrthoFinder
GWHTAZTZ030606 CRR2 Pentatricopeptide repeat-containing protein At5g16860 &... 0.18 OrthoFinder
HUANGJINYA08975 CRR2 Pentatricopeptide repeat-containing protein At4g30700 &... 0.03 OrthoFinder
JINXUAN57108 CRR2 Pentatricopeptide repeat-containing protein At5g16860 &... 0.14 OrthoFinder
TIEGUANYIN05908 CRR2 Pentatricopeptide repeat-containing protein At4g30700 &... 0.07 OrthoFinder
ZIJUAN39527 No alias Pentatricopeptide repeat-containing protein At2g33760 &... 0.09 OrthoFinder
FUDINGDABAI51133 CRR2 Pentatricopeptide repeat-containing protein At3g12770 &... 0.04 OrthoFinder
GWHTAZTZ030606 CRR2 Pentatricopeptide repeat-containing protein At5g16860 &... 0.18 OrthoFinder
HUANGJINYA08975 CRR2 Pentatricopeptide repeat-containing protein At4g30700 &... 0.03 OrthoFinder
JINXUAN57108 CRR2 Pentatricopeptide repeat-containing protein At5g16860 &... 0.14 OrthoFinder
TIEGUANYIN05908 CRR2 Pentatricopeptide repeat-containing protein At4g30700 &... 0.07 OrthoFinder
ZIJUAN39527 No alias Pentatricopeptide repeat-containing protein At2g33760 &... 0.09 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007154 cell communication IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007268 chemical synaptic transmission IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010941 regulation of cell death IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0023052 signaling IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033130 acetylcholine receptor binding IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0042981 regulation of apoptotic process IEP HCCA
BP GO:0043067 regulation of programmed cell death IEP HCCA
MF GO:0043495 protein-membrane adaptor activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0051743 red chlorophyll catabolite reductase activity IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0098916 anterograde trans-synaptic signaling IEP HCCA
BP GO:0099536 synaptic signaling IEP HCCA
BP GO:0099537 trans-synaptic signaling IEP HCCA
InterPro domains Description Start Stop
IPR032867 DYW_dom 521 645
IPR002885 Pentatricopeptide_repeat 222 246
IPR002885 Pentatricopeptide_repeat 422 444
IPR002885 Pentatricopeptide_repeat 148 177
IPR002885 Pentatricopeptide_repeat 347 395
IPR002885 Pentatricopeptide_repeat 247 295
No external refs found!