CSA001135.1 (CSA001135)

Aliases : CSA001135

Description : Pentatricopeptide repeat-containing protein At1g02150 & original description: none

Gene families : OG0015906 (OrthoFinder) Phylogenetic Tree(s): OG0015906_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CSA001135.1
Cluster	HCCA: Cluster_58

Target	Alias	Description	ECC score	Gene Family Method
ECHA52617	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.07	OrthoFinder
FUDINGDABAI48668	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.07	OrthoFinder
GWHTACFB011373	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.06	OrthoFinder
GWHTAZTZ009686	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.08	OrthoFinder
HUANGJINYA49364	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.03	OrthoFinder
JINXUAN53494	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.07	OrthoFinder
TIEGUANYIN35240	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.03	OrthoFinder
ZHONGCHA49382	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.03	OrthoFinder
ZIJUAN42829	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.07	OrthoFinder
CSS0023456.1	CSS0023456	Pentatricopeptide repeat-containing protein At1g02150 &...	0.04	OrthoFinder
ECHA52617	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.07	OrthoFinder
FUDINGDABAI48668	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.07	OrthoFinder
GWHTACFB011373	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.06	OrthoFinder
GWHTAZTZ009686	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.08	OrthoFinder
HUANGJINYA49364	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.03	OrthoFinder
JINXUAN53494	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.07	OrthoFinder
TIEGUANYIN35240	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.03	OrthoFinder
ZHONGCHA49382	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.03	OrthoFinder
ZIJUAN42829	No alias	Pentatricopeptide repeat-containing protein At1g02150 &...	0.07	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0001664	G protein-coupled receptor binding	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004134	4-alpha-glucanotransferase activity	IEP	HCCA
MF	GO:0005506	iron ion binding	IEP	HCCA
CC	GO:0005575	cellular_component	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005856	cytoskeleton	IEP	HCCA
CC	GO:0005885	Arp2/3 protein complex	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0007015	actin filament organization	IEP	HCCA
MF	GO:0008134	transcription factor binding	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
MF	GO:0015299	obsolete solute:proton antiporter activity	IEP	HCCA
CC	GO:0015629	actin cytoskeleton	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
CC	GO:0019030	icosahedral viral capsid	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034314	Arp2/3 complex-mediated actin nucleation	IEP	HCCA
MF	GO:0043169	cation binding	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0045010	actin nucleation	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
MF	GO:0046872	metal ion binding	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:0097435	supramolecular fiber organization	IEP	HCCA
CC	GO:0110165	cellular anatomical entity	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	184	212
IPR002885	Pentatricopeptide_repeat	361	385
IPR002885	Pentatricopeptide_repeat	396	423
IPR002885	Pentatricopeptide_repeat	238	296

External Links

No external refs found!

CSA001135.1 (CSA001135)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation