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  3. Camellia sinensis var. assamica cv. 'Yunkang 10'
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  5. CSA001551.1

CSA001551.1 (CSA001551)


Aliases : CSA001551

Description : Pentatricopeptide repeat-containing protein At4g02750 & original description: none


Gene families : OG0007808 (OrthoFinder) Phylogenetic Tree(s): OG0007808_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CSA001551.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
GWHTACFB014242 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.16 OrthoFinder
GWHTAZTZ005184 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.06 OrthoFinder
HUANGJINYA40206 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.18 OrthoFinder
JINXUAN42154 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.14 OrthoFinder
ZHONGCHA41710 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.15 OrthoFinder
ZIJUAN56159 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.05 OrthoFinder
GWHTACFB014242 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.16 OrthoFinder
GWHTAZTZ005184 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.06 OrthoFinder
HUANGJINYA40206 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.18 OrthoFinder
JINXUAN42154 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.14 OrthoFinder
ZHONGCHA41710 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.15 OrthoFinder
ZIJUAN56159 No alias Pentatricopeptide repeat-containing protein At4g02750 &... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005643 nuclear pore IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0017056 structural constituent of nuclear pore IEA Interproscan
MF GO:0042802 identical protein binding IEA Interproscan
MF GO:0051743 red chlorophyll catabolite reductase activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000372 Group I intron splicing IEP HCCA
BP GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007154 cell communication IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007268 chemical synaptic transmission IEP HCCA
MF GO:0008514 organic anion transmembrane transporter activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010941 regulation of cell death IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0023052 signaling IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032217 riboflavin transmembrane transporter activity IEP HCCA
BP GO:0032218 riboflavin transport IEP HCCA
MF GO:0033130 acetylcholine receptor binding IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0042981 regulation of apoptotic process IEP HCCA
BP GO:0043067 regulation of programmed cell death IEP HCCA
MF GO:0043495 protein-membrane adaptor activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051180 vitamin transport IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0090482 vitamin transmembrane transporter activity IEP HCCA
BP GO:0098916 anterograde trans-synaptic signaling IEP HCCA
BP GO:0099536 synaptic signaling IEP HCCA
BP GO:0099537 trans-synaptic signaling IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 185 208
IPR002885 Pentatricopeptide_repeat 154 183
IPR002885 Pentatricopeptide_repeat 544 568
IPR002885 Pentatricopeptide_repeat 216 242
IPR002885 Pentatricopeptide_repeat 63 89
IPR002885 Pentatricopeptide_repeat 309 339
IPR002885 Pentatricopeptide_repeat 123 152
IPR002885 Pentatricopeptide_repeat 278 307
IPR002885 Pentatricopeptide_repeat 247 271
IPR002885 Pentatricopeptide_repeat 92 120
IPR002885 Pentatricopeptide_repeat 469 517
IPR002885 Pentatricopeptide_repeat 369 416
IPR032867 DYW_dom 643 766
No external refs found!