CSA003220.1 (EMB2296, CSA003220)

Aliases : EMB2296, CSA003220

Description : 60S ribosomal protein L8 & original description: none

Gene families : OG0003657 (OrthoFinder) Phylogenetic Tree(s): OG0003657_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CSA003220.1
Cluster	HCCA: Cluster_78

Target	Alias	Description	ECC score	Gene Family Method
FUDINGDABAI16079	EMB2296	60S ribosomal protein L8 & original description: none	0.04	OrthoFinder
GWHTACFB031506	EMB2296	60S ribosomal protein L8 & original description:...	0.08	OrthoFinder
GWHTAZTZ021239	EMB2296	60S ribosomal protein L8 & original description:...	0.06	OrthoFinder
HUANGJINYA01969	EMB2296	60S ribosomal protein L8 & original description: none	0.04	OrthoFinder
CSS0005345.1	CSS0005345, EMB2296	60S ribosomal protein L8 & original description: gene=CSS0005345	0.12	OrthoFinder
FUDINGDABAI16079	EMB2296	60S ribosomal protein L8 & original description: none	0.04	OrthoFinder
GWHTACFB031506	EMB2296	60S ribosomal protein L8 & original description:...	0.08	OrthoFinder
GWHTAZTZ021239	EMB2296	60S ribosomal protein L8 & original description:...	0.06	OrthoFinder
HUANGJINYA01969	EMB2296	60S ribosomal protein L8 & original description: none	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004455	ketol-acid reductoisomerase activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
BP	GO:0006979	response to oxidative stress	IEP	HCCA
BP	GO:0009081	branched-chain amino acid metabolic process	IEP	HCCA
BP	GO:0009082	branched-chain amino acid biosynthetic process	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022669	Ribosomal_L2_C	95	137
IPR022669	Ribosomal_L2_C	179	305
IPR022666	Rbsml_prot_L2_RNA-bd_dom	10	86

External Links

No external refs found!

CSA003220.1 (EMB2296, CSA003220)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation