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  5. CSA004205.1

CSA004205.1 (CSA004205, CRR22)


Aliases : CSA004205, CRR22

Description : Pentatricopeptide repeat-containing protein At1g11290, chloroplastic & original description: none


Gene families : OG0021767 (OrthoFinder) Phylogenetic Tree(s): OG0021767_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CSA004205.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
FUDINGDABAI04404 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.12 OrthoFinder
GWHTAZTZ018914 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder
HUANGJINYA07462 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder
JINXUAN06035 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.09 OrthoFinder
LJCHANGYE11879 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.11 OrthoFinder
TIEGUANYIN02283 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder
ZHONGCHA09761 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder
ZIJUAN09526 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder
CSS0022917.1 CSS0022917, CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.07 OrthoFinder
FUDINGDABAI04404 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.12 OrthoFinder
GWHTAZTZ018914 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder
HUANGJINYA07462 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder
JINXUAN06035 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.09 OrthoFinder
LJCHANGYE11879 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.11 OrthoFinder
TIEGUANYIN02283 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.05 OrthoFinder
ZHONGCHA09761 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.03 OrthoFinder
ZIJUAN09526 CRR22 Pentatricopeptide repeat-containing protein At1g11290,... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000372 Group I intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005643 nuclear pore IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0008514 organic anion transmembrane transporter activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0010941 regulation of cell death IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0015711 organic anion transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP HCCA
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP HCCA
CC GO:0017053 transcription repressor complex IEP HCCA
MF GO:0017056 structural constituent of nuclear pore IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0032217 riboflavin transmembrane transporter activity IEP HCCA
BP GO:0032218 riboflavin transport IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
BP GO:0042981 regulation of apoptotic process IEP HCCA
BP GO:0043067 regulation of programmed cell death IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051180 vitamin transport IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0051743 red chlorophyll catabolite reductase activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0090482 vitamin transmembrane transporter activity IEP HCCA
CC GO:0110001 toxin-antitoxin complex IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 106 151
IPR002885 Pentatricopeptide_repeat 405 452
IPR002885 Pentatricopeptide_repeat 507 553
IPR002885 Pentatricopeptide_repeat 304 351
IPR002885 Pentatricopeptide_repeat 203 250
IPR032867 DYW_dom 679 802
IPR002885 Pentatricopeptide_repeat 580 604
IPR002885 Pentatricopeptide_repeat 378 399
IPR002885 Pentatricopeptide_repeat 278 302
IPR002885 Pentatricopeptide_repeat 479 503
No external refs found!