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  3. Camellia sinensis var. assamica cv. 'Yunkang 10'
  4. Sequence
  5. CSA005109.1

CSA005109.1 (CSA005109)


Aliases : CSA005109

Description : Pentatricopeptide repeat-containing protein At3g05340 & original description: none


Gene families : OG0014756 (OrthoFinder) Phylogenetic Tree(s): OG0014756_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CSA005109.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
ANJIBAICHA37570 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.04 OrthoFinder
HUANGJINYA27699 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.07 OrthoFinder
JINXUAN32186 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.06 OrthoFinder
LJCHANGYE33252 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.04 OrthoFinder
TIEGUANYIN19350 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.05 OrthoFinder
ZHONGCHA29629 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.06 OrthoFinder
ZIJUAN52508 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.06 OrthoFinder
ANJIBAICHA37570 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.04 OrthoFinder
HUANGJINYA27699 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.07 OrthoFinder
JINXUAN32186 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.06 OrthoFinder
LJCHANGYE33252 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.04 OrthoFinder
TIEGUANYIN19350 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.05 OrthoFinder
ZHONGCHA29629 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.06 OrthoFinder
ZIJUAN52508 No alias Pentatricopeptide repeat-containing protein At3g05340 &... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003951 NAD+ kinase activity IEP HCCA
CC GO:0005869 dynactin complex IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006739 NADP metabolic process IEP HCCA
BP GO:0006741 NADP biosynthetic process IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019359 nicotinamide nucleotide biosynthetic process IEP HCCA
BP GO:0019362 pyridine nucleotide metabolic process IEP HCCA
BP GO:0019363 pyridine nucleotide biosynthetic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
BP GO:0031554 regulation of termination of DNA-templated transcription IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
BP GO:0043242 negative regulation of protein-containing complex disassembly IEP HCCA
BP GO:0043244 regulation of protein-containing complex disassembly IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046496 nicotinamide nucleotide metabolic process IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0048523 negative regulation of cellular process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051128 regulation of cellular component organization IEP HCCA
BP GO:0051129 negative regulation of cellular component organization IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0060567 negative regulation of termination of DNA-templated transcription IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0072524 pyridine-containing compound metabolic process IEP HCCA
BP GO:0072525 pyridine-containing compound biosynthetic process IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 299 319
IPR002885 Pentatricopeptide_repeat 327 355
IPR002885 Pentatricopeptide_repeat 93 120
IPR002885 Pentatricopeptide_repeat 121 169
IPR002885 Pentatricopeptide_repeat 223 264
IPR002885 Pentatricopeptide_repeat 426 473
No external refs found!