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  3. Camellia sinensis var. assamica cv. 'Yunkang 10'
  4. Sequence
  5. CSA008821.1

CSA008821.1 (CSA008821)


Aliases : CSA008821

Description : Pentatricopeptide repeat-containing protein At3g14330 & original description: none


Gene families : OG0015568 (OrthoFinder) Phylogenetic Tree(s): OG0015568_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CSA008821.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
ECHA45365 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.06 OrthoFinder
FUDINGDABAI45461 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.07 OrthoFinder
GWHTACFB001187 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.1 OrthoFinder
GWHTAZTZ001990 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.11 OrthoFinder
HUANGJINYA42439 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.05 OrthoFinder
JINXUAN51683 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.17 OrthoFinder
LJCHANGYE51130 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.03 OrthoFinder
TIEGUANYIN34280 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.03 OrthoFinder
TIEGUANYIN34281 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.07 OrthoFinder
ZHONGCHA43937 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.09 OrthoFinder
ZIJUAN14990 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.12 OrthoFinder
CSS0017180.1 CSS0017180 Pentatricopeptide repeat-containing protein At3g14330 &... 0.1 OrthoFinder
ECHA45365 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.06 OrthoFinder
FUDINGDABAI45461 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.07 OrthoFinder
GWHTACFB001187 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.1 OrthoFinder
GWHTAZTZ001990 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.11 OrthoFinder
HUANGJINYA42439 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.05 OrthoFinder
JINXUAN51683 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.17 OrthoFinder
LJCHANGYE51130 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.03 OrthoFinder
TIEGUANYIN34280 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.03 OrthoFinder
TIEGUANYIN34281 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.07 OrthoFinder
ZHONGCHA43937 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.09 OrthoFinder
ZIJUAN14990 No alias Pentatricopeptide repeat-containing protein At3g14330 &... 0.12 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
MF GO:0042802 identical protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000372 Group I intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile IEP HCCA
MF GO:0001664 G protein-coupled receptor binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005730 nucleolus IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
CC GO:0019030 icosahedral viral capsid IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
CC GO:0019773 proteasome core complex, alpha-subunit complex IEP HCCA
CC GO:0030684 preribosome IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 39 62
IPR002885 Pentatricopeptide_repeat 150 175
IPR002885 Pentatricopeptide_repeat 323 347
IPR002885 Pentatricopeptide_repeat 424 448
IPR032867 DYW_dom 523 646
IPR002885 Pentatricopeptide_repeat 349 396
IPR002885 Pentatricopeptide_repeat 247 295
No external refs found!