CSA012166.1 (CSA012166)

Aliases : CSA012166

Description : DEAD-box ATP-dependent RNA helicase 16 & original description: none

Gene families : OG0012332 (OrthoFinder) Phylogenetic Tree(s): OG0012332_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CSA012166.1
Cluster	HCCA: Cluster_234

Target	Alias	Description	ECC score	Gene Family Method
FUDINGDABAI40670	No alias	DEAD-box ATP-dependent RNA helicase 16 & original...	0.07	OrthoFinder
HUANGJINYA38179	No alias	DEAD-box ATP-dependent RNA helicase 16 & original...	0.05	OrthoFinder
ZHONGCHA40143	No alias	DEAD-box ATP-dependent RNA helicase 16 & original...	0.03	OrthoFinder
FUDINGDABAI40670	No alias	DEAD-box ATP-dependent RNA helicase 16 & original...	0.07	OrthoFinder
HUANGJINYA38179	No alias	DEAD-box ATP-dependent RNA helicase 16 & original...	0.05	OrthoFinder
ZHONGCHA40143	No alias	DEAD-box ATP-dependent RNA helicase 16 & original...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005102	signaling receptor binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0016787	hydrolase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0005085	guanyl-nucleotide exchange factor activity	IEP	HCCA
CC	GO:0005643	nuclear pore	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0030117	membrane coat	IEP	HCCA
MF	GO:0030695	GTPase regulator activity	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
MF	GO:0060589	nucleoside-triphosphatase regulator activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001650	Helicase_C	264	406
IPR011545	DEAD/DEAH_box_helicase_dom	48	225

External Links

No external refs found!