1. Home
  2. Species
  3. Camellia sinensis var. assamica cv. 'Yunkang 10'
  4. Sequence
  5. CSA016180.1

CSA016180.1 (CSA016180)


Aliases : CSA016180

Description : Pentatricopeptide repeat-containing protein At4g21065 & original description: none


Gene families : OG0004084 (OrthoFinder) Phylogenetic Tree(s): OG0004084_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CSA016180.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
ECHA45082 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.03 OrthoFinder
ECHA66327 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.03 OrthoFinder
FUDINGDABAI41148 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.08 OrthoFinder
FUDINGDABAI59570 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.05 OrthoFinder
GWHTAZTZ016733 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.03 OrthoFinder
GWHTAZTZ026006 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.03 OrthoFinder
HUANGJINYA40481 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.04 OrthoFinder
JINXUAN00501 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.02 OrthoFinder
JINXUAN46535 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.05 OrthoFinder
LJCHANGYE06200 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.03 OrthoFinder
TIEGUANYIN30205 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.14 OrthoFinder
TIEGUANYIN47478 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.06 OrthoFinder
ZHONGCHA02046 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.04 OrthoFinder
ZHONGCHA42829 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.05 OrthoFinder
ZIJUAN29568 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.03 OrthoFinder
CSS0021183.1 CSS0021183 Pentatricopeptide repeat-containing protein At4g14820 &... 0.03 OrthoFinder
CSS0024872.1 CSS0024872 Pentatricopeptide repeat-containing protein At4g21065 &... 0.09 OrthoFinder
CSS0030931.1 CSS0030931 Pentatricopeptide repeat-containing protein At4g21065 &... 0.05 OrthoFinder
ECHA45082 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.03 OrthoFinder
ECHA66327 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.03 OrthoFinder
FUDINGDABAI41148 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.08 OrthoFinder
FUDINGDABAI59570 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.05 OrthoFinder
GWHTAZTZ016733 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.03 OrthoFinder
GWHTAZTZ026006 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.03 OrthoFinder
HUANGJINYA40481 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.04 OrthoFinder
JINXUAN00501 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.02 OrthoFinder
JINXUAN46535 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.05 OrthoFinder
LJCHANGYE06200 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.03 OrthoFinder
TIEGUANYIN30205 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.14 OrthoFinder
TIEGUANYIN47478 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.06 OrthoFinder
ZHONGCHA02046 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.04 OrthoFinder
ZHONGCHA42829 No alias Pentatricopeptide repeat-containing protein At4g21065 &... 0.05 OrthoFinder
ZIJUAN29568 No alias Pentatricopeptide repeat-containing protein At4g14820 &... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005869 dynactin complex IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0007154 cell communication IEP HCCA
BP GO:0007267 cell-cell signaling IEP HCCA
BP GO:0007268 chemical synaptic transmission IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008962 phosphatidylglycerophosphatase activity IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0009890 negative regulation of biosynthetic process IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016597 amino acid binding IEP HCCA
MF GO:0016743 carboxyl- or carbamoyltransferase activity IEP HCCA
CC GO:0017053 transcription repressor complex IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0023052 signaling IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0031327 negative regulation of cellular biosynthetic process IEP HCCA
MF GO:0031406 carboxylic acid binding IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
MF GO:0033130 acetylcholine receptor binding IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
MF GO:0043177 organic acid binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0043495 protein-membrane adaptor activity IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0045892 negative regulation of DNA-templated transcription IEP HCCA
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051253 negative regulation of RNA metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:0098916 anterograde trans-synaptic signaling IEP HCCA
BP GO:0099536 synaptic signaling IEP HCCA
BP GO:0099537 trans-synaptic signaling IEP HCCA
CC GO:0110001 toxin-antitoxin complex IEP HCCA
BP GO:1902679 negative regulation of RNA biosynthetic process IEP HCCA
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 349 376
IPR002885 Pentatricopeptide_repeat 314 343
IPR002885 Pentatricopeptide_repeat 286 311
IPR002885 Pentatricopeptide_repeat 109 158
IPR002885 Pentatricopeptide_repeat 211 258
IPR032867 DYW_dom 485 609
No external refs found!