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  5. CSA028044.1

CSA028044.1 (CSA028044, OTP82)


Aliases : CSA028044, OTP82

Description : Pentatricopeptide repeat-containing protein At1g08070, chloroplastic & original description: none


Gene families : OG0014676 (OrthoFinder) Phylogenetic Tree(s): OG0014676_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CSA028044.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
FUDINGDABAI24769 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder
GWHTACFB005994 SLO1 Pentatricopeptide repeat-containing protein At1g08070,... 0.06 OrthoFinder
HUANGJINYA25211 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.07 OrthoFinder
JINXUAN30800 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.31 OrthoFinder
TIEGUANYIN16841 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.18 OrthoFinder
ZHONGCHA28088 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder
ZIJUAN43285 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.11 OrthoFinder
CSS0004860.1 CSS0004860, OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.05 OrthoFinder
FUDINGDABAI24769 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.04 OrthoFinder
GWHTACFB005994 SLO1 Pentatricopeptide repeat-containing protein At1g08070,... 0.06 OrthoFinder
HUANGJINYA25211 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.07 OrthoFinder
JINXUAN30800 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.31 OrthoFinder
TIEGUANYIN16841 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.18 OrthoFinder
ZHONGCHA28088 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.02 OrthoFinder
ZIJUAN43285 OTP82 Pentatricopeptide repeat-containing protein At1g08070,... 0.11 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000372 Group I intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile IEP HCCA
BP GO:0006083 acetate metabolic process IEP HCCA
BP GO:0006113 fermentation IEP HCCA
BP GO:0006274 DNA replication termination IEP HCCA
BP GO:0006417 regulation of translation IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0006554 lysine catabolic process IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0008104 protein localization IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009063 amino acid catabolic process IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009068 aspartate family amino acid catabolic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010035 response to inorganic substance IEP HCCA
BP GO:0010038 response to metal ion IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0010608 post-transcriptional regulation of gene expression IEP HCCA
BP GO:0015031 protein transport IEP HCCA
BP GO:0016054 organic acid catabolic process IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016756 glutathione gamma-glutamylcysteinyltransferase activity IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019475 L-lysine catabolic process to acetate IEP HCCA
BP GO:0019477 L-lysine catabolic process IEP HCCA
BP GO:0019665 anaerobic amino acid catabolic process IEP HCCA
BP GO:0019666 nitrogenous compound fermentation IEP HCCA
BP GO:0019748 secondary metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0033036 macromolecule localization IEP HCCA
BP GO:0034248 regulation of amide metabolic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0044282 small molecule catabolic process IEP HCCA
BP GO:0044550 secondary metabolite biosynthetic process IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
BP GO:0045184 establishment of protein localization IEP HCCA
BP GO:0046395 carboxylic acid catabolic process IEP HCCA
BP GO:0046440 L-lysine metabolic process IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
BP GO:0046907 intracellular transport IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0046937 phytochelatin metabolic process IEP HCCA
BP GO:0046938 phytochelatin biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
MF GO:0051011 microtubule minus-end binding IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051246 regulation of protein metabolic process IEP HCCA
BP GO:0051641 cellular localization IEP HCCA
BP GO:0051649 establishment of localization in cell IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0070727 cellular macromolecule localization IEP HCCA
BP GO:0071702 organic substance transport IEP HCCA
BP GO:0071705 nitrogen compound transport IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
BP GO:1901606 alpha-amino acid catabolic process IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 320 369
IPR002885 Pentatricopeptide_repeat 423 471
IPR002885 Pentatricopeptide_repeat 230 257
IPR002885 Pentatricopeptide_repeat 498 523
IPR002885 Pentatricopeptide_repeat 261 287
IPR002885 Pentatricopeptide_repeat 202 223
IPR002885 Pentatricopeptide_repeat 567 593
No external refs found!