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  3. Camellia sinensis var. assamica cv. 'Yunkang 10'
  4. Sequence
  5. CSA030434.1

CSA030434.1 (CSA030434)


Aliases : CSA030434

Description : 40S ribosomal protein S12 & original description: none


Gene families : OG0002996 (OrthoFinder) Phylogenetic Tree(s): OG0002996_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: CSA030434.1
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
ANJIBAICHA11903 No alias 40S ribosomal protein S12 & original description: none 0.05 OrthoFinder
ANJIBAICHA12498 No alias 40S ribosomal protein S12 & original description: none 0.06 OrthoFinder
ECHA03490 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ECHA06774 No alias 40S ribosomal protein S12 & original description: none 0.06 OrthoFinder
FUDINGDABAI03484 No alias 40S ribosomal protein S12 & original description: none 0.14 OrthoFinder
FUDINGDABAI06986 No alias 40S ribosomal protein S12 & original description: none 0.07 OrthoFinder
GWHTACFB013744 No alias 40S ribosomal protein S12 & original description:... 0.07 OrthoFinder
HUANGJINYA03991 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
HUANGJINYA07626 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
JINXUAN04892 No alias 40S ribosomal protein S12 & original description: none 0.19 OrthoFinder
JINXUAN10245 No alias 40S ribosomal protein S12 & original description: none 0.06 OrthoFinder
LJCHANGYE06792 No alias 40S ribosomal protein S12 & original description: none 0.1 OrthoFinder
TIEGUANYIN01985 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
TIEGUANYIN25356 No alias 40S ribosomal protein S12 & original description: none 0.1 OrthoFinder
ZHONGCHA04928 No alias 40S ribosomal protein S12 & original description: none 0.18 OrthoFinder
ZHONGCHA07768 No alias 40S ribosomal protein S12 & original description: none 0.16 OrthoFinder
ZIJUAN24869 No alias 40S ribosomal protein S12 & original description: none 0.12 OrthoFinder
ZIJUAN40221 No alias 40S ribosomal protein S12 & original description: none 0.05 OrthoFinder
ANJIBAICHA11903 No alias 40S ribosomal protein S12 & original description: none 0.05 OrthoFinder
ANJIBAICHA12498 No alias 40S ribosomal protein S12 & original description: none 0.06 OrthoFinder
CSS0000337.1 CSS0000337 40S ribosomal protein S12 & original description:... 0.1 OrthoFinder
CSS0019557.1 CSS0019557 40S ribosomal protein S12 & original description:... 0.16 OrthoFinder
CSS0026119.1 CSS0026119 40S ribosomal protein S12 & original description:... 0.05 OrthoFinder
ECHA03490 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
ECHA06774 No alias 40S ribosomal protein S12 & original description: none 0.06 OrthoFinder
FUDINGDABAI03484 No alias 40S ribosomal protein S12 & original description: none 0.14 OrthoFinder
FUDINGDABAI06986 No alias 40S ribosomal protein S12 & original description: none 0.07 OrthoFinder
GWHTACFB013744 No alias 40S ribosomal protein S12 & original description:... 0.07 OrthoFinder
HUANGJINYA03991 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
HUANGJINYA07626 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
JINXUAN04892 No alias 40S ribosomal protein S12 & original description: none 0.19 OrthoFinder
JINXUAN10245 No alias 40S ribosomal protein S12 & original description: none 0.06 OrthoFinder
LJCHANGYE06792 No alias 40S ribosomal protein S12 & original description: none 0.1 OrthoFinder
TIEGUANYIN01985 No alias 40S ribosomal protein S12 & original description: none 0.03 OrthoFinder
TIEGUANYIN25356 No alias 40S ribosomal protein S12 & original description: none 0.1 OrthoFinder
ZHONGCHA04928 No alias 40S ribosomal protein S12 & original description: none 0.18 OrthoFinder
ZHONGCHA07768 No alias 40S ribosomal protein S12 & original description: none 0.16 OrthoFinder
ZIJUAN24869 No alias 40S ribosomal protein S12 & original description: none 0.12 OrthoFinder
ZIJUAN40221 No alias 40S ribosomal protein S12 & original description: none 0.05 OrthoFinder

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000150 DNA strand exchange activity IEP HCCA
BP GO:0000387 spliceosomal snRNP assembly IEP HCCA
MF GO:0001671 ATPase activator activity IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0004819 glutamine-tRNA ligase activity IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
MF GO:0005549 odorant binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006425 glutaminyl-tRNA aminoacylation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009894 regulation of catabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0022618 protein-RNA complex assembly IEP HCCA
BP GO:0030162 regulation of proteolysis IEP HCCA
MF GO:0030247 polysaccharide binding IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042176 regulation of protein catabolic process IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
MF GO:0051087 protein-folding chaperone binding IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
BP GO:0061136 regulation of proteasomal protein catabolic process IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071826 protein-RNA complex organization IEP HCCA
CC GO:0110165 cellular anatomical entity IEP HCCA
BP GO:1901564 organonitrogen compound metabolic process IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903050 regulation of proteolysis involved in protein catabolic process IEP HCCA
MF GO:2001070 starch binding IEP HCCA
InterPro domains Description Start Stop
IPR004038 Ribosomal_L7Ae/L30e/S12e/Gad45 32 125
No external refs found!