FUDINGDABAI07392 (ATSIG1, SIGB, ATSIG2,...)

Aliases : ATSIG1, SIGB, ATSIG2, ABC1, SIG2, SIGA, SIG1

Description : RNA polymerase sigma factor sigB & original description: none

Gene families : OG0013478 (OrthoFinder) Phylogenetic Tree(s): OG0013478_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: FUDINGDABAI07392
Cluster	HCCA: Cluster_260

Target	Alias	Description	ECC score	Gene Family Method
ANJIBAICHA12719	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.09	OrthoFinder
CSA018012.1	CSA018012, SIG1,...	RNA polymerase sigma factor sigB & original description: none	0.04	OrthoFinder
ECHA09180	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.02	OrthoFinder
GWHTACFB019692	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original...	0.05	OrthoFinder
GWHTAZTZ019678	ATSIG1, ABC1,...	RNA polymerase sigma factor sigB & original...	0.06	OrthoFinder
HUANGJINYA04497	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.06	OrthoFinder
JINXUAN10447	ATSIG1, ABC1,...	RNA polymerase sigma factor sigB & original description: none	0.11	OrthoFinder
LJCHANGYE10450	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.05	OrthoFinder
TIEGUANYIN01074	ATSIG1, ABC1,...	RNA polymerase sigma factor sigB & original description: none	0.04	OrthoFinder
ZHONGCHA09732	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.06	OrthoFinder
ZIJUAN42887	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.02	OrthoFinder
ANJIBAICHA12719	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.09	OrthoFinder
CSA018012.1	CSA018012, SIG1,...	RNA polymerase sigma factor sigB & original description: none	0.04	OrthoFinder
CSS0002041.1	ATSIG1, ABC1,...	RNA polymerase sigma factor sigB & original...	0.05	OrthoFinder
CSS0044214.1	ATSIG1,...	RNA polymerase sigma factor sigB & original...	0.05	OrthoFinder
ECHA09180	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.02	OrthoFinder
GWHTACFB019692	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original...	0.05	OrthoFinder
GWHTAZTZ019678	ATSIG1, ABC1,...	RNA polymerase sigma factor sigB & original...	0.06	OrthoFinder
HUANGJINYA04497	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.06	OrthoFinder
JINXUAN10447	ATSIG1, ABC1,...	RNA polymerase sigma factor sigB & original description: none	0.11	OrthoFinder
LJCHANGYE10450	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.05	OrthoFinder
TIEGUANYIN01074	ATSIG1, ABC1,...	RNA polymerase sigma factor sigB & original description: none	0.04	OrthoFinder
ZHONGCHA09732	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.06	OrthoFinder
ZIJUAN42887	ATSIG1, SIGB,...	RNA polymerase sigma factor sigB & original description: none	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006352	DNA-templated transcription initiation	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016987	sigma factor activity	IEA	Interproscan
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
MF	GO:0000774	adenyl-nucleotide exchange factor activity	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004345	glucose-6-phosphate dehydrogenase activity	IEP	HCCA
MF	GO:0004525	ribonuclease III activity	IEP	HCCA
MF	GO:0004601	peroxidase activity	IEP	HCCA
MF	GO:0004852	uroporphyrinogen-III synthase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0005996	monosaccharide metabolic process	IEP	HCCA
BP	GO:0006006	glucose metabolic process	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016209	antioxidant activity	IEP	HCCA
MF	GO:0016491	oxidoreductase activity	IEP	HCCA
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	HCCA
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
BP	GO:0019318	hexose metabolic process	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
MF	GO:0032296	double-stranded RNA-specific ribonuclease activity	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
MF	GO:0050661	NADP binding	IEP	HCCA
MF	GO:0051087	protein-folding chaperone binding	IEP	HCCA
MF	GO:0051920	peroxiredoxin activity	IEP	HCCA
MF	GO:0060590	ATPase regulator activity	IEP	HCCA
MF	GO:0070567	cytidylyltransferase activity	IEP	HCCA
MF	GO:0070569	uridylyltransferase activity	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007627	RNA_pol_sigma70_r2	344	413
IPR007630	RNA_pol_sigma70_r4	512	564
IPR007624	RNA_pol_sigma70_r3	423	498

External Links

No external refs found!

FUDINGDABAI07392 (ATSIG1, SIGB, ATSIG2,...)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation