FUDINGDABAI08768 (MEE40)

Aliases : MEE40

Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic & original description: none

Gene families : OG0011543 (OrthoFinder) Phylogenetic Tree(s): OG0011543_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: FUDINGDABAI08768
Cluster	HCCA: Cluster_260

Target	Alias	Description	ECC score	Gene Family Method
ANJIBAICHA19253	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.03	OrthoFinder
CSA026140.1	CSA026140, MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.06	OrthoFinder
ECHA12990	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.04	OrthoFinder
GWHTACFB003158	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.09	OrthoFinder
GWHTAZTZ031117	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.07	OrthoFinder
HUANGJINYA12503	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.11	OrthoFinder
JINXUAN13013	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.09	OrthoFinder
TIEGUANYIN04309	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.02	OrthoFinder
ZHONGCHA13576	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.07	OrthoFinder
ZIJUAN30693	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.02	OrthoFinder
ANJIBAICHA19253	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.03	OrthoFinder
CSA026140.1	CSA026140, MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.06	OrthoFinder
CSS0020348.1	CSS0020348, MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.05	OrthoFinder
CSS0025676.1	CSS0025676, MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.03	OrthoFinder
ECHA12990	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.04	OrthoFinder
GWHTACFB003158	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.09	OrthoFinder
GWHTAZTZ031117	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.07	OrthoFinder
HUANGJINYA12503	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.11	OrthoFinder
JINXUAN13013	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.09	OrthoFinder
TIEGUANYIN04309	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.02	OrthoFinder
ZHONGCHA13576	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.07	OrthoFinder
ZIJUAN30693	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004497	monooxygenase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0015049	methane monooxygenase activity	IEA	Interproscan
BP	GO:0015947	methane metabolic process	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	None	Extended
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0043446	cellular alkane metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
MF	GO:0004832	valine-tRNA ligase activity	IEP	HCCA
MF	GO:0005198	structural molecule activity	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006082	organic acid metabolic process	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006353	DNA-templated transcription termination	IEP	HCCA
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEP	HCCA
BP	GO:0006399	tRNA metabolic process	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006520	amino acid metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006729	tetrahydrobiopterin biosynthetic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
MF	GO:0008124	4-alpha-hydroxytetrahydrobiopterin dehydratase activity	IEP	HCCA
BP	GO:0009058	biosynthetic process	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016835	carbon-oxygen lyase activity	IEP	HCCA
MF	GO:0016836	hydro-lyase activity	IEP	HCCA
MF	GO:0016874	ligase activity	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
BP	GO:0018130	heterocycle biosynthetic process	IEP	HCCA
CC	GO:0019030	icosahedral viral capsid	IEP	HCCA
BP	GO:0019438	aromatic compound biosynthetic process	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0019752	carboxylic acid metabolic process	IEP	HCCA
BP	GO:0032774	RNA biosynthetic process	IEP	HCCA
BP	GO:0034311	diol metabolic process	IEP	HCCA
BP	GO:0034312	diol biosynthetic process	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034654	nucleobase-containing compound biosynthetic process	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
BP	GO:0042558	pteridine-containing compound metabolic process	IEP	HCCA
BP	GO:0042559	pteridine-containing compound biosynthetic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
BP	GO:0043170	macromolecule metabolic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043228	non-membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043232	intracellular non-membrane-bounded organelle	IEP	HCCA
BP	GO:0043436	oxoacid metabolic process	IEP	HCCA
BP	GO:0043603	amide metabolic process	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044238	primary metabolic process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046146	tetrahydrobiopterin metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140223	general transcription initiation factor activity	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1901576	organic substance biosynthetic process	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	209	256
IPR002885	Pentatricopeptide_repeat	349	398
IPR002885	Pentatricopeptide_repeat	490	538
IPR002885	Pentatricopeptide_repeat	633	677
IPR002885	Pentatricopeptide_repeat	282	328
IPR002885	Pentatricopeptide_repeat	562	608
IPR002885	Pentatricopeptide_repeat	419	468

External Links

No external refs found!

FUDINGDABAI08768 (MEE40)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation