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  3. Camellia sinensis var. sinensis cv. 'Fuding Dabaicha'
  4. Sequence
  5. FUDINGDABAI16079

FUDINGDABAI16079 (EMB2296)


Aliases : EMB2296

Description : 60S ribosomal protein L8 & original description: none


Gene families : OG0003657 (OrthoFinder) Phylogenetic Tree(s): OG0003657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: FUDINGDABAI16079
Cluster HCCA: Cluster_234

Target Alias Description ECC score Gene Family Method Actions
CSA003220.1 EMB2296, CSA003220 60S ribosomal protein L8 & original description: none 0.04 OrthoFinder
GWHTACFB024447 EMB2296 60S ribosomal protein L8 & original description:... 0.04 OrthoFinder
GWHTACFB031506 EMB2296 60S ribosomal protein L8 & original description:... 0.07 OrthoFinder
GWHTAZTZ021239 EMB2296 60S ribosomal protein L8 & original description:... 0.1 OrthoFinder
HUANGJINYA01969 EMB2296 60S ribosomal protein L8 & original description: none 0.03 OrthoFinder
HUANGJINYA14941 EMB2296 60S ribosomal protein L8 & original description: none 0.04 OrthoFinder
JINXUAN15967 EMB2296 60S ribosomal protein L8 & original description: none 0.05 OrthoFinder
TIEGUANYIN08689 EMB2296 60S ribosomal protein L8 & original description: none 0.04 OrthoFinder
TIEGUANYIN47704 EMB2296 60S ribosomal protein L8 & original description: none 0.08 OrthoFinder
ZHONGCHA03693 EMB2296 60S ribosomal protein L8 & original description: none 0.03 OrthoFinder
ZHONGCHA17185 EMB2296 60S ribosomal protein L8 & original description: none 0.1 OrthoFinder
CSA003220.1 EMB2296, CSA003220 60S ribosomal protein L8 & original description: none 0.04 OrthoFinder
CSS0005345.1 CSS0005345, EMB2296 60S ribosomal protein L8 & original description: gene=CSS0005345 0.03 OrthoFinder
CSS0048258.1 CSS0048258, EMB2296 60S ribosomal protein L8 & original description: gene=CSS0048258 0.05 OrthoFinder
GWHTACFB024447 EMB2296 60S ribosomal protein L8 & original description:... 0.04 OrthoFinder
GWHTACFB031506 EMB2296 60S ribosomal protein L8 & original description:... 0.07 OrthoFinder
GWHTAZTZ021239 EMB2296 60S ribosomal protein L8 & original description:... 0.1 OrthoFinder
HUANGJINYA01969 EMB2296 60S ribosomal protein L8 & original description: none 0.03 OrthoFinder
HUANGJINYA14941 EMB2296 60S ribosomal protein L8 & original description: none 0.04 OrthoFinder
JINXUAN15967 EMB2296 60S ribosomal protein L8 & original description: none 0.05 OrthoFinder
TIEGUANYIN08689 EMB2296 60S ribosomal protein L8 & original description: none 0.04 OrthoFinder
TIEGUANYIN47704 EMB2296 60S ribosomal protein L8 & original description: none 0.08 OrthoFinder
ZHONGCHA03693 EMB2296 60S ribosomal protein L8 & original description: none 0.03 OrthoFinder
ZHONGCHA17185 EMB2296 60S ribosomal protein L8 & original description: none 0.1 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome IEA Interproscan
CC GO:0005840 ribosome IEA Interproscan
BP GO:0006412 translation IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000387 spliceosomal snRNP assembly IEP HCCA
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004127 cytidylate kinase activity IEP HCCA
MF GO:0004888 transmembrane signaling receptor activity IEP HCCA
CC GO:0005743 mitochondrial inner membrane IEP HCCA
CC GO:0005751 mitochondrial respiratory chain complex IV IEP HCCA
CC GO:0005759 mitochondrial matrix IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
CC GO:0015934 large ribosomal subunit IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016776 phosphotransferase activity, phosphate group as acceptor IEP HCCA
MF GO:0017154 semaphorin receptor activity IEP HCCA
BP GO:0019072 viral genome packaging IEP HCCA
BP GO:0019073 viral DNA genome packaging IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019866 organelle inner membrane IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0022618 protein-RNA complex assembly IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031974 membrane-enclosed lumen IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0038023 signaling receptor activity IEP HCCA
CC GO:0043233 organelle lumen IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
CC GO:0044391 ribosomal subunit IEP HCCA
CC GO:0045277 respiratory chain complex IV IEP HCCA
MF GO:0050145 nucleoside monophosphate kinase activity IEP HCCA
MF GO:0060089 molecular transducer activity IEP HCCA
CC GO:0061617 MICOS complex IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
CC GO:0070013 intracellular organelle lumen IEP HCCA
CC GO:0070069 cytochrome complex IEP HCCA
BP GO:0071824 protein-DNA complex organization IEP HCCA
BP GO:0071826 protein-RNA complex organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
CC GO:0098796 membrane protein complex IEP HCCA
CC GO:0098798 mitochondrial protein-containing complex IEP HCCA
CC GO:0098800 inner mitochondrial membrane protein complex IEP HCCA
CC GO:0098803 respiratory chain complex IEP HCCA
InterPro domains Description Start Stop
IPR022669 Ribosomal_L2_C 105 231
IPR022666 Rbsml_prot_L2_RNA-bd_dom 20 96
No external refs found!