1. Home
  2. Species
  3. Camellia sinensis var. sinensis cv. 'Fuding Dabaicha'
  4. Sequence
  5. FUDINGDABAI38230

FUDINGDABAI38230


Description : Histone-binding protein MSI1 & original description: none


Gene families : OG0002611 (OrthoFinder) Phylogenetic Tree(s): OG0002611_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: FUDINGDABAI38230
Cluster HCCA: Cluster_422

Target Alias Description ECC score Gene Family Method Actions
CSA014241.1 CSA014241 WD-40 repeat-containing protein MSI2 & original... 0.03 OrthoFinder
ECHA40660 No alias Histone-binding protein MSI1 & original description: none 0.03 OrthoFinder
GWHTACFB009395 No alias Histone-binding protein MSI1 & original description:... 0.04 OrthoFinder
HUANGJINYA37290 No alias Histone-binding protein MSI1 & original description: none 0.04 OrthoFinder
CSA014241.1 CSA014241 WD-40 repeat-containing protein MSI2 & original... 0.03 OrthoFinder
CSS0005601.1 CSS0005601 Histone-binding protein MSI1 & original description:... 0.05 OrthoFinder
ECHA40660 No alias Histone-binding protein MSI1 & original description: none 0.03 OrthoFinder
GWHTACFB009395 No alias Histone-binding protein MSI1 & original description:... 0.04 OrthoFinder
HUANGJINYA37290 No alias Histone-binding protein MSI1 & original description: none 0.04 OrthoFinder

Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003682 chromatin binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000808 origin recognition complex IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004527 exonuclease activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005634 nucleus IEP HCCA
CC GO:0005664 nuclear origin of replication recognition complex IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006576 biogenic amine metabolic process IEP HCCA
BP GO:0009308 amine metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016782 transferase activity, transferring sulphur-containing groups IEP HCCA
MF GO:0016787 hydrolase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0019843 rRNA binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
BP GO:0021549 cerebellum development IEP HCCA
BP GO:0030154 cell differentiation IEP HCCA
BP GO:0030182 neuron differentiation IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0032502 developmental process IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
MF GO:0035596 methylthiotransferase activity IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
BP GO:0048856 anatomical structure development IEP HCCA
BP GO:0048869 cellular developmental process IEP HCCA
MF GO:0050497 alkylthioltransferase activity IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051539 4 iron, 4 sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
BP GO:0051726 regulation of cell cycle IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 324 357
IPR001680 WD40_repeat 412 448
IPR022052 Histone-bd_RBBP4_N 104 170
No external refs found!