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  3. Camellia sinensis var. sinensis cv. 'Fuding Dabaicha'
  4. Sequence
  5. FUDINGDABAI56137

FUDINGDABAI56137 (SVR7)


Aliases : SVR7

Description : Pentatricopeptide repeat-containing protein At4g16390, chloroplastic & original description: none


Gene families : OG0016447 (OrthoFinder) Phylogenetic Tree(s): OG0016447_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: FUDINGDABAI56137
Cluster HCCA: Cluster_260

Target Alias Description ECC score Gene Family Method Actions
CSA017800.1 SVR7, CSA017800 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder
ECHA61618 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder
GWHTACFB022813 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.09 OrthoFinder
GWHTAZTZ025059 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.09 OrthoFinder
HUANGJINYA55383 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder
JINXUAN62765 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder
LJCHANGYE63660 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.09 OrthoFinder
TIEGUANYIN42371 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.1 OrthoFinder
ZHONGCHA58326 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder
ZIJUAN24060 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder
CSA017800.1 SVR7, CSA017800 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder
CSS0012721.1 CSS0012721, SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.1 OrthoFinder
ECHA61618 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder
GWHTACFB022813 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.09 OrthoFinder
GWHTAZTZ025059 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.09 OrthoFinder
HUANGJINYA55383 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder
JINXUAN62765 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder
LJCHANGYE63660 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.09 OrthoFinder
TIEGUANYIN42371 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.1 OrthoFinder
ZHONGCHA58326 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder
ZIJUAN24060 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005739 mitochondrion IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
BP GO:0002949 tRNA threonylcarbamoyladenosine modification IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
MF GO:0005126 cytokine receptor binding IEP HCCA
MF GO:0005173 stem cell factor receptor binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0006720 isoprenoid metabolic process IEP HCCA
BP GO:0006721 terpenoid metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0007155 cell adhesion IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
MF GO:0008237 metallopeptidase activity IEP HCCA
BP GO:0008299 isoprenoid biosynthetic process IEP HCCA
MF GO:0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity IEP HCCA
MF GO:0009378 four-way junction helicase activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016114 terpenoid biosynthetic process IEP HCCA
MF GO:0016209 antioxidant activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016849 phosphorus-oxygen lyase activity IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
CC GO:0019867 outer membrane IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0070525 tRNA threonylcarbamoyladenosine metabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 180 225
IPR002885 Pentatricopeptide_repeat 319 366
IPR002885 Pentatricopeptide_repeat 390 435
IPR002885 Pentatricopeptide_repeat 450 495
IPR002885 Pentatricopeptide_repeat 256 276
IPR002885 Pentatricopeptide_repeat 287 315
No external refs found!