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  5. GWHTACFB013638

GWHTACFB013638


Description : Nuclear pore complex protein NUP50A & original description: Protein=GWHPACFB013638


Gene families : OG0019870 (OrthoFinder) Phylogenetic Tree(s): OG0019870_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: GWHTACFB013638
Cluster HCCA: Cluster_22

Target Alias Description ECC score Gene Family Method Actions
HUANGJINYA39185 No alias Nuclear pore complex protein NUP50A & original description: none 0.05 OrthoFinder
JINXUAN42076 No alias Nuclear pore complex protein NUP50A & original description: none 0.04 OrthoFinder
LJCHANGYE46802 No alias Nuclear pore complex protein NUP50A & original description: none 0.02 OrthoFinder
ZHONGCHA42380 No alias Nuclear pore complex protein NUP50A & original description: none 0.05 OrthoFinder
CSS0044508.1 CSS0044508 Nuclear pore complex protein NUP50A & original... 0.04 OrthoFinder
HUANGJINYA39185 No alias Nuclear pore complex protein NUP50A & original description: none 0.05 OrthoFinder
JINXUAN42076 No alias Nuclear pore complex protein NUP50A & original description: none 0.04 OrthoFinder
LJCHANGYE46802 No alias Nuclear pore complex protein NUP50A & original description: none 0.02 OrthoFinder
ZHONGCHA42380 No alias Nuclear pore complex protein NUP50A & original description: none 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004190 aspartic-type endopeptidase activity IEA Interproscan
CC GO:0005643 nuclear pore IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
BP GO:0016485 protein processing IEA Interproscan
BP GO:0023041 neuronal signal transduction IEA Interproscan
CC GO:0030867 rough endoplasmic reticulum membrane IEA Interproscan
BP GO:0046907 intracellular transport IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000731 DNA synthesis involved in DNA repair IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003779 actin binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
CC GO:0005667 transcription regulator complex IEP HCCA
CC GO:0005672 transcription factor TFIIA complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006270 DNA replication initiation IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006298 mismatch repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006352 DNA-templated transcription initiation IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 DNA damage response IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008134 transcription factor binding IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
MF GO:0009378 four-way junction helicase activity IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP HCCA
MF GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0022618 protein-RNA complex assembly IEP HCCA
CC GO:0030684 preribosome IEP HCCA
MF GO:0030983 mismatched DNA binding IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034654 nucleobase-containing compound biosynthetic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0070034 telomerase RNA binding IEP HCCA
BP GO:0071107 response to parathyroid hormone IEP HCCA
BP GO:0071826 protein-RNA complex organization IEP HCCA
BP GO:0071897 DNA biosynthetic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1904868 telomerase catalytic core complex assembly IEP HCCA
BP GO:1905323 telomerase holoenzyme complex assembly IEP HCCA
InterPro domains Description Start Stop
IPR015007 NUP2/50/61 200 260
IPR000156 Ran_bind_dom 459 574
No external refs found!