LJCHANGYE04501 (EMB2296)

Aliases : EMB2296

Description : 60S ribosomal protein L8 & original description: none

Gene families : OG0003657 (OrthoFinder) Phylogenetic Tree(s): OG0003657_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: LJCHANGYE04501
Cluster	HCCA: Cluster_137

Target	Alias	Description	ECC score	Gene Family Method
ANJIBAICHA10098	EMB2296	60S ribosomal protein L8 & original description: none	0.04	OrthoFinder
ECHA01522	EMB2296	60S ribosomal protein L8 & original description: none	0.05	OrthoFinder
GWHTACFB031506	EMB2296	60S ribosomal protein L8 & original description:...	0.04	OrthoFinder
JINXUAN03341	EMB2296	60S ribosomal protein L8 & original description: none	0.03	OrthoFinder
JINXUAN15967	EMB2296	60S ribosomal protein L8 & original description: none	0.05	OrthoFinder
TIEGUANYIN08689	EMB2296	60S ribosomal protein L8 & original description: none	0.08	OrthoFinder
TIEGUANYIN47704	EMB2296	60S ribosomal protein L8 & original description: none	0.04	OrthoFinder
ANJIBAICHA10098	EMB2296	60S ribosomal protein L8 & original description: none	0.04	OrthoFinder
ECHA01522	EMB2296	60S ribosomal protein L8 & original description: none	0.05	OrthoFinder
GWHTACFB031506	EMB2296	60S ribosomal protein L8 & original description:...	0.04	OrthoFinder
JINXUAN03341	EMB2296	60S ribosomal protein L8 & original description: none	0.03	OrthoFinder
JINXUAN15967	EMB2296	60S ribosomal protein L8 & original description: none	0.05	OrthoFinder
TIEGUANYIN08689	EMB2296	60S ribosomal protein L8 & original description: none	0.08	OrthoFinder
TIEGUANYIN47704	EMB2296	60S ribosomal protein L8 & original description: none	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	HCCA
CC	GO:0001405	PAM complex, Tim23 associated import motor	IEP	HCCA
BP	GO:0001510	RNA methylation	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
MF	GO:0008097	5S rRNA binding	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0008173	RNA methyltransferase activity	IEP	HCCA
MF	GO:0008175	tRNA methyltransferase activity	IEP	HCCA
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0016426	tRNA (adenine) methyltransferase activity	IEP	HCCA
MF	GO:0016429	tRNA (adenine-N1-)-methyltransferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
BP	GO:0018193	peptidyl-amino acid modification	IEP	HCCA
BP	GO:0018208	peptidyl-proline modification	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0030488	tRNA methylation	IEP	HCCA
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	HCCA
BP	GO:0032259	methylation	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
CC	GO:0034708	methyltransferase complex	IEP	HCCA
CC	GO:0034719	SMN-Sm protein complex	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043414	macromolecule methylation	IEP	HCCA
CC	GO:0043527	tRNA methyltransferase complex	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	HCCA
CC	GO:0120114	Sm-like protein family complex	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022666	Rbsml_prot_L2_RNA-bd_dom	19	95
IPR022669	Ribosomal_L2_C	104	230

External Links

No external refs found!

LJCHANGYE04501 (EMB2296)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation