CSS0005601.1 (CSS0005601)

Aliases : CSS0005601

Description : Histone-binding protein MSI1 & original description: gene=CSS0005601

Gene families : OG0002611 (OrthoFinder) Phylogenetic Tree(s): OG0002611_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CSS0005601.1

Target	Alias	Description	ECC score	Gene Family Method
CSA014241.1	CSA014241	WD-40 repeat-containing protein MSI2 & original...	0.04	OrthoFinder
FUDINGDABAI38230	No alias	Histone-binding protein MSI1 & original description: none	0.05	OrthoFinder
GWHTACFB009395	No alias	Histone-binding protein MSI1 & original description:...	0.21	OrthoFinder
GWHTAZTZ040833	No alias	Histone-binding protein MSI1 & original description:...	0.1	OrthoFinder
ZIJUAN34173	No alias	Histone-binding protein MSI1 & original description: none	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
CC	GO:0000775	chromosome, centromeric region	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003682	chromatin binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0044877	protein-containing complex binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0098687	chromosomal region	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000462	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
BP	GO:0006364	rRNA processing	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
BP	GO:0016072	rRNA metabolic process	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0030490	maturation of SSU-rRNA	IEP	HCCA
MF	GO:0030515	snoRNA binding	IEP	HCCA
BP	GO:0034470	ncRNA processing	IEP	HCCA
BP	GO:0034660	ncRNA metabolic process	IEP	HCCA
MF	GO:0140299	small molecule sensor activity	IEP	HCCA
MF	GO:0140612	DNA damage sensor activity	IEP	HCCA
MF	GO:0140664	ATP-dependent DNA damage sensor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR022052	Histone-bd_RBBP4_N	49	115
IPR001680	WD40_repeat	357	393
IPR001680	WD40_repeat	269	302

External Links

No external refs found!