CSS0007289.1 (CSS0007289, ARF8, ATARF8)

Aliases : CSS0007289, ARF8, ATARF8

Description : Auxin response factor 8 & original description: gene=CSS0007289

Gene families : OG0004393 (OrthoFinder) Phylogenetic Tree(s): OG0004393_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CSS0007289.1

Target	Alias	Description	ECC score	Gene Family Method
CSA022096.1	ATARF8, ARF8, CSA022096	Auxin response factor 8 & original description: none	0.03	OrthoFinder
FUDINGDABAI35699	ARF8, ATARF8	Auxin response factor 8 & original description: none	0.03	OrthoFinder
FUDINGDABAI45581	ARF8, ATARF8	Auxin response factor 8 & original description: none	0.03	OrthoFinder
GWHTAZTZ004965	ARF8, ATARF8	Auxin response factor 8 & original description:...	0.07	OrthoFinder
HUANGJINYA35123	ARF8, ATARF8	Auxin response factor 8 & original description: none	0.05	OrthoFinder
LJCHANGYE50725	ARF8, ATARF8	Auxin response factor 8 & original description: none	0.03	OrthoFinder
TIEGUANYIN31304	ARF8, ATARF8	Auxin response factor 8 & original description: none	0.05	OrthoFinder
ZHONGCHA37207	ARF8, ATARF8	Auxin response factor 8 & original description: none	0.05	OrthoFinder
ZHONGCHA43608	ARF8, ATARF8	Auxin response factor 8 & original description: none	0.08	OrthoFinder
ZIJUAN41057	ARF8, ATARF8	Auxin response factor 8 & original description: none	0.05	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	HCCA
MF	GO:0003779	actin binding	IEP	HCCA
MF	GO:0004427	inorganic diphosphate phosphatase activity	IEP	HCCA
CC	GO:0005667	transcription regulator complex	IEP	HCCA
CC	GO:0005672	transcription factor TFIIA complex	IEP	HCCA
BP	GO:0006367	transcription initiation at RNA polymerase II promoter	IEP	HCCA
BP	GO:0007186	G protein-coupled receptor signaling pathway	IEP	HCCA
MF	GO:0016462	pyrophosphatase activity	IEP	HCCA
MF	GO:0016787	hydrolase activity	IEP	HCCA
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	HCCA
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	HCCA
MF	GO:0031683	G-protein beta/gamma-subunit complex binding	IEP	HCCA
CC	GO:0090575	RNA polymerase II transcription regulator complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	127	228
IPR010525	ARF_dom	253	321

External Links

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CSS0007289.1 (CSS0007289, ARF8, ATARF8)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation