CSS0020348.1 (CSS0020348, MEE40)

Aliases : CSS0020348, MEE40

Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic & original description: gene=CSS0020348

Gene families : OG0011543 (OrthoFinder) Phylogenetic Tree(s): OG0011543_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CSS0020348.1

Target	Alias	Description	ECC score	Gene Family Method
ANJIBAICHA19253	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.02	OrthoFinder
CSA026140.1	CSA026140, MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.06	OrthoFinder
ECHA12990	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.06	OrthoFinder
FUDINGDABAI08768	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.05	OrthoFinder
GWHTACFB003158	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.08	OrthoFinder
GWHTAZTZ031117	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.04	OrthoFinder
HUANGJINYA12503	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.04	OrthoFinder
JINXUAN13013	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.03	OrthoFinder
LJCHANGYE13053	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.07	OrthoFinder
TIEGUANYIN04309	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.09	OrthoFinder
ZHONGCHA13576	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.06	OrthoFinder
ZIJUAN30693	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.04	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004497	monooxygenase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0015049	methane monooxygenase activity	IEA	Interproscan
BP	GO:0015947	methane metabolic process	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	None	Extended
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0043446	cellular alkane metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	IEP	HCCA
MF	GO:0003676	nucleic acid binding	IEP	HCCA
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003735	structural constituent of ribosome	IEP	HCCA
MF	GO:0003887	DNA-directed DNA polymerase activity	IEP	HCCA
MF	GO:0004112	cyclic-nucleotide phosphodiesterase activity	IEP	HCCA
MF	GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	IEP	HCCA
MF	GO:0004115	3',5'-cyclic-AMP phosphodiesterase activity	IEP	HCCA
MF	GO:0004177	aminopeptidase activity	IEP	HCCA
MF	GO:0004832	valine-tRNA ligase activity	IEP	HCCA
MF	GO:0004853	uroporphyrinogen decarboxylase activity	IEP	HCCA
CC	GO:0005739	mitochondrion	IEP	HCCA
CC	GO:0005840	ribosome	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006195	purine nucleotide catabolic process	IEP	HCCA
BP	GO:0006198	cAMP catabolic process	IEP	HCCA
BP	GO:0006310	DNA recombination	IEP	HCCA
BP	GO:0006412	translation	IEP	HCCA
BP	GO:0006438	valyl-tRNA aminoacylation	IEP	HCCA
BP	GO:0006518	peptide metabolic process	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006778	porphyrin-containing compound metabolic process	IEP	HCCA
BP	GO:0006779	porphyrin-containing compound biosynthetic process	IEP	HCCA
BP	GO:0006807	nitrogen compound metabolic process	IEP	HCCA
BP	GO:0007130	synaptonemal complex assembly	IEP	HCCA
BP	GO:0007131	reciprocal meiotic recombination	IEP	HCCA
BP	GO:0007276	gamete generation	IEP	HCCA
BP	GO:0007283	spermatogenesis	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0008239	dipeptidyl-peptidase activity	IEP	HCCA
BP	GO:0009059	macromolecule biosynthetic process	IEP	HCCA
BP	GO:0009154	purine ribonucleotide catabolic process	IEP	HCCA
BP	GO:0009166	nucleotide catabolic process	IEP	HCCA
BP	GO:0009187	cyclic nucleotide metabolic process	IEP	HCCA
BP	GO:0009214	cyclic nucleotide catabolic process	IEP	HCCA
BP	GO:0009261	ribonucleotide catabolic process	IEP	HCCA
MF	GO:0016702	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	IEP	HCCA
MF	GO:0016829	lyase activity	IEP	HCCA
MF	GO:0016830	carbon-carbon lyase activity	IEP	HCCA
MF	GO:0016831	carboxy-lyase activity	IEP	HCCA
MF	GO:0016987	sigma factor activity	IEP	HCCA
BP	GO:0019048	modulation by virus of host process	IEP	HCCA
BP	GO:0019054	modulation by virus of host cellular process	IEP	HCCA
BP	GO:0019082	viral protein processing	IEP	HCCA
BP	GO:0019087	transformation of host cell by virus	IEP	HCCA
BP	GO:0022402	cell cycle process	IEP	HCCA
BP	GO:0022414	reproductive process	IEP	HCCA
CC	GO:0031011	Ino80 complex	IEP	HCCA
BP	GO:0032502	developmental process	IEP	HCCA
MF	GO:0034061	DNA polymerase activity	IEP	HCCA
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
BP	GO:0035821	modulation of process of another organism	IEP	HCCA
BP	GO:0035825	homologous recombination	IEP	HCCA
BP	GO:0043043	peptide biosynthetic process	IEP	HCCA
CC	GO:0043226	organelle	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043229	intracellular organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0043604	amide biosynthetic process	IEP	HCCA
BP	GO:0044003	modulation by symbiont of host process	IEP	HCCA
BP	GO:0044068	modulation by symbiont of host cellular process	IEP	HCCA
BP	GO:0044249	cellular biosynthetic process	IEP	HCCA
BP	GO:0044271	cellular nitrogen compound biosynthetic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046058	cAMP metabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0048232	male gamete generation	IEP	HCCA
BP	GO:0048609	multicellular organismal reproductive process	IEP	HCCA
BP	GO:0051276	chromosome organization	IEP	HCCA
MF	GO:0051920	peroxiredoxin activity	IEP	HCCA
BP	GO:0052652	cyclic purine nucleotide metabolic process	IEP	HCCA
MF	GO:0070009	serine-type aminopeptidase activity	IEP	HCCA
BP	GO:0070192	chromosome organization involved in meiotic cell cycle	IEP	HCCA
BP	GO:0070193	synaptonemal complex organization	IEP	HCCA
CC	GO:0070603	SWI/SNF superfamily-type complex	IEP	HCCA
BP	GO:0072523	purine-containing compound catabolic process	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
MF	GO:0097159	organic cyclic compound binding	IEP	HCCA
CC	GO:0097346	INO80-type complex	IEP	HCCA
MF	GO:0140098	catalytic activity, acting on RNA	IEP	HCCA
MF	GO:0140110	transcription regulator activity	IEP	HCCA
BP	GO:0140527	reciprocal homologous recombination	IEP	HCCA
MF	GO:0140640	catalytic activity, acting on a nucleic acid	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA
MF	GO:1901363	heterocyclic compound binding	IEP	HCCA
BP	GO:1901566	organonitrogen compound biosynthetic process	IEP	HCCA
BP	GO:1903046	meiotic cell cycle process	IEP	HCCA
CC	GO:1904949	ATPase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	209	256
IPR002885	Pentatricopeptide_repeat	349	398
IPR002885	Pentatricopeptide_repeat	490	538
IPR002885	Pentatricopeptide_repeat	562	608
IPR002885	Pentatricopeptide_repeat	282	328
IPR002885	Pentatricopeptide_repeat	633	677
IPR002885	Pentatricopeptide_repeat	419	468

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CSS0020348.1 (CSS0020348, MEE40)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation