CSS0025676.1 (CSS0025676, MEE40)

Aliases : CSS0025676, MEE40

Description : Pentatricopeptide repeat-containing protein At3g53700, chloroplastic & original description: gene=CSS0025676

Gene families : OG0011543 (OrthoFinder) Phylogenetic Tree(s): OG0011543_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CSS0025676.1

Target	Alias	Description	ECC score	Gene Family Method
ANJIBAICHA19253	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.08	OrthoFinder
CSA026140.1	CSA026140, MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.06	OrthoFinder
FUDINGDABAI08768	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.03	OrthoFinder
GWHTACFB003158	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.08	OrthoFinder
GWHTAZTZ031117	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.03	OrthoFinder
HUANGJINYA12503	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.06	OrthoFinder
TIEGUANYIN04309	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.03	OrthoFinder
ZIJUAN30693	MEE40	Pentatricopeptide repeat-containing protein At3g53700,...	0.06	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004497	monooxygenase activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0007165	signal transduction	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
MF	GO:0015049	methane monooxygenase activity	IEA	Interproscan
BP	GO:0015947	methane metabolic process	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	None	Extended
MF	GO:0016709	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0043446	cellular alkane metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:0120252	hydrocarbon metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000049	tRNA binding	IEP	HCCA
BP	GO:0000372	Group I intron splicing	IEP	HCCA
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000376	RNA splicing, via transesterification reactions with guanosine as nucleophile	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0004812	aminoacyl-tRNA ligase activity	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006418	tRNA aminoacylation for protein translation	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
MF	GO:0008270	zinc ion binding	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0016070	RNA metabolic process	IEP	HCCA
MF	GO:0016875	ligase activity, forming carbon-oxygen bonds	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0043038	amino acid activation	IEP	HCCA
BP	GO:0043039	tRNA aminoacylation	IEP	HCCA
MF	GO:0044183	protein folding chaperone	IEP	HCCA
MF	GO:0051082	unfolded protein binding	IEP	HCCA
MF	GO:0140101	catalytic activity, acting on a tRNA	IEP	HCCA
MF	GO:0140662	ATP-dependent protein folding chaperone	IEP	HCCA
CC	GO:1990904	ribonucleoprotein complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR002885	Pentatricopeptide_repeat	349	398
IPR002885	Pentatricopeptide_repeat	282	328
IPR002885	Pentatricopeptide_repeat	490	538
IPR002885	Pentatricopeptide_repeat	209	256
IPR002885	Pentatricopeptide_repeat	633	677
IPR002885	Pentatricopeptide_repeat	562	608
IPR002885	Pentatricopeptide_repeat	419	468

External Links

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CSS0025676.1 (CSS0025676, MEE40)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation