CSS0041546.1 (CSS0041546)

Aliases : CSS0041546

Description : Ribosome production factor 2 homolog & original description: gene=CSS0041546

Gene families : OG0017709 (OrthoFinder) Phylogenetic Tree(s): OG0017709_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CSS0041546.1

Target	Alias	Description	ECC score	Gene Family Method
CSA031163.1	CSA031163	Ribosome production factor 2 homolog & original...	0.03	OrthoFinder
FUDINGDABAI10355	No alias	Ribosome production factor 2 homolog & original...	0.04	OrthoFinder
GWHTACFB003379	No alias	Ribosome production factor 2 homolog & original...	0.03	OrthoFinder
TIEGUANYIN04964	No alias	Ribosome production factor 2 homolog & original...	0.03	OrthoFinder
ZHONGCHA10499	No alias	Ribosome production factor 2 homolog & original...	0.11	OrthoFinder
ZIJUAN46516	No alias	Ribosome production factor 2 homolog & original...	0.03	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
MF	GO:0019843	rRNA binding	IEA	Interproscan
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
CC	GO:0000775	chromosome, centromeric region	IEP	HCCA
MF	GO:0001181	RNA polymerase I general transcription initiation factor activity	IEP	HCCA
MF	GO:0003682	chromatin binding	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
CC	GO:0005730	nucleolus	IEP	HCCA
BP	GO:0006361	transcription initiation at RNA polymerase I promoter	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
MF	GO:0008168	methyltransferase activity	IEP	HCCA
MF	GO:0016741	transferase activity, transferring one-carbon groups	IEP	HCCA
BP	GO:0022613	ribonucleoprotein complex biogenesis	IEP	HCCA
CC	GO:0030684	preribosome	IEP	HCCA
CC	GO:0032040	small-subunit processome	IEP	HCCA
BP	GO:0042254	ribosome biogenesis	IEP	HCCA
BP	GO:0044085	cellular component biogenesis	IEP	HCCA
CC	GO:0098687	chromosomal region	IEP	HCCA
MF	GO:0140223	general transcription initiation factor activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007109	Brix	35	231

External Links

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