ZHONGCHA01124 (CPZ, TRZ2)


Aliases : CPZ, TRZ2

Description : tRNase Z TRZ2, chloroplastic & original description: none


Gene families : OG0013229 (OrthoFinder) Phylogenetic Tree(s): OG0013229_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ZHONGCHA01124
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
ECHA01634 CPZ, TRZ2 tRNase Z TRZ2, chloroplastic & original description: none 0.04 OrthoFinder
GWHTACFB018515 CPZ, TRZ2 tRNase Z TRZ2, chloroplastic & original description:... 0.03 OrthoFinder
GWHTAZTZ015253 CPZ, TRZ2 tRNase Z TRZ2, chloroplastic & original description:... 0.02 OrthoFinder
ZIJUAN00047 CPZ, TRZ2 tRNase Z TRZ2, chloroplastic & original description: none 0.04 OrthoFinder
CSS0006302.1 CPZ, CSS0006302, TRZ2 tRNase Z TRZ2, chloroplastic & original description:... 0.03 OrthoFinder
CSS0020098.1 TRZ2, CPZ, CSS0020098 tRNase Z TRZ2, chloroplastic & original description:... 0.06 OrthoFinder
ECHA01634 CPZ, TRZ2 tRNase Z TRZ2, chloroplastic & original description: none 0.04 OrthoFinder
GWHTACFB018515 CPZ, TRZ2 tRNase Z TRZ2, chloroplastic & original description:... 0.03 OrthoFinder
GWHTAZTZ015253 CPZ, TRZ2 tRNase Z TRZ2, chloroplastic & original description:... 0.02 OrthoFinder
ZIJUAN00047 CPZ, TRZ2 tRNase Z TRZ2, chloroplastic & original description: none 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity IEA Interproscan
BP GO:0006198 cAMP catabolic process IEA Interproscan
Type GO Term Name Evidence Source
MF GO:0000976 transcription cis-regulatory region binding IEP HCCA
MF GO:0001067 transcription regulatory region nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP HCCA
BP GO:0005975 carbohydrate metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046794 transport of virus IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0075733 intracellular transport of virus IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:1990837 sequence-specific double-stranded DNA binding IEP HCCA
InterPro domains Description Start Stop
IPR001279 Metallo-B-lactamas 134 341
No external refs found!