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  3. Camellia sinensis var. sinensis cv. 'Zhongcha 108'
  4. Sequence
  5. ZHONGCHA14826

ZHONGCHA14826


Description : Heterogeneous nuclear ribonucleoprotein Q & original description: none


Gene families : OG0008334 (OrthoFinder) Phylogenetic Tree(s): OG0008334_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ZHONGCHA14826
Cluster HCCA: Cluster_550

Target Alias Description ECC score Gene Family Method Actions
CSA004338.1 CSA004338 no annotation & original description: none 0.15 OrthoFinder
ECHA14252 No alias Heterogeneous nuclear ribonucleoprotein Q & original... 0.05 OrthoFinder
FUDINGDABAI16841 No alias Heterogeneous nuclear ribonucleoprotein Q & original... 0.03 OrthoFinder
GWHTAZTZ023395 No alias Heterogeneous nuclear ribonucleoprotein Q & original... 0.04 OrthoFinder
JINXUAN15196 No alias no annotation & original description: none 0.06 OrthoFinder
ZIJUAN02144 No alias Heterogeneous nuclear ribonucleoprotein Q & original... 0.03 OrthoFinder
CSA004338.1 CSA004338 no annotation & original description: none 0.15 OrthoFinder
ECHA14252 No alias Heterogeneous nuclear ribonucleoprotein Q & original... 0.05 OrthoFinder
FUDINGDABAI16841 No alias Heterogeneous nuclear ribonucleoprotein Q & original... 0.03 OrthoFinder
GWHTAZTZ023395 No alias Heterogeneous nuclear ribonucleoprotein Q & original... 0.04 OrthoFinder
JINXUAN15196 No alias no annotation & original description: none 0.06 OrthoFinder
ZIJUAN02144 No alias Heterogeneous nuclear ribonucleoprotein Q & original... 0.03 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0004852 uroporphyrinogen-III synthase activity IEP HCCA
BP GO:0006354 DNA-templated transcription elongation IEP HCCA
BP GO:0006368 transcription elongation by RNA polymerase II IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
CC GO:0008023 transcription elongation factor complex IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
BP GO:0016570 histone modification IEP HCCA
CC GO:0016593 Cdc73/Paf1 complex IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0018130 heterocycle biosynthetic process IEP HCCA
BP GO:0019438 aromatic compound biosynthetic process IEP HCCA
BP GO:0033013 tetrapyrrole metabolic process IEP HCCA
BP GO:0033014 tetrapyrrole biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901362 organic cyclic compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 314 387
IPR000504 RRM_dom 411 475
IPR000504 RRM_dom 233 303
No external refs found!