ZHONGCHA27905

Description : H/ACA ribonucleoprotein complex subunit 4 & original description: none

Gene families : OG0003046 (OrthoFinder) Phylogenetic Tree(s): OG0003046_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: ZHONGCHA27905
Cluster	HCCA: Cluster_81

Target	Alias	Description	ECC score	Gene Family Method
ECHA57137	No alias	no annotation & original description: none	0.06	OrthoFinder
FUDINGDABAI51795	No alias	no annotation & original description: none	0.06	OrthoFinder
GWHTACFB032336	No alias	H/ACA ribonucleoprotein complex subunit 4 & original...	0.06	OrthoFinder
GWHTAZTZ003658	No alias	H/ACA ribonucleoprotein complex subunit 4 & original...	0.02	OrthoFinder
HUANGJINYA53116	No alias	no annotation & original description: none	0.03	OrthoFinder
JINXUAN30972	No alias	H/ACA ribonucleoprotein complex subunit 4 & original...	0.07	OrthoFinder
TIEGUANYIN18699	No alias	H/ACA ribonucleoprotein complex subunit 4 & original...	0.05	OrthoFinder
TIEGUANYIN40333	No alias	no annotation & original description: none	0.02	OrthoFinder
ECHA57137	No alias	no annotation & original description: none	0.06	OrthoFinder
FUDINGDABAI51795	No alias	no annotation & original description: none	0.06	OrthoFinder
GWHTACFB032336	No alias	H/ACA ribonucleoprotein complex subunit 4 & original...	0.06	OrthoFinder
GWHTAZTZ003658	No alias	H/ACA ribonucleoprotein complex subunit 4 & original...	0.02	OrthoFinder
HUANGJINYA53116	No alias	no annotation & original description: none	0.03	OrthoFinder
JINXUAN30972	No alias	H/ACA ribonucleoprotein complex subunit 4 & original...	0.07	OrthoFinder
TIEGUANYIN18699	No alias	H/ACA ribonucleoprotein complex subunit 4 & original...	0.05	OrthoFinder
TIEGUANYIN40333	No alias	no annotation & original description: none	0.02	OrthoFinder

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0001522	pseudouridine synthesis	IEP	HCCA
BP	GO:0002949	tRNA threonylcarbamoyladenosine modification	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0003916	DNA topoisomerase activity	IEP	HCCA
MF	GO:0003918	DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity	IEP	HCCA
MF	GO:0004176	ATP-dependent peptidase activity	IEP	HCCA
MF	GO:0004222	metalloendopeptidase activity	IEP	HCCA
MF	GO:0004784	superoxide dismutase activity	IEP	HCCA
MF	GO:0005126	cytokine receptor binding	IEP	HCCA
MF	GO:0005173	stem cell factor receptor binding	IEP	HCCA
BP	GO:0006066	alcohol metabolic process	IEP	HCCA
BP	GO:0006265	DNA topological change	IEP	HCCA
BP	GO:0006353	DNA-templated transcription termination	IEP	HCCA
BP	GO:0006801	superoxide metabolic process	IEP	HCCA
BP	GO:0007155	cell adhesion	IEP	HCCA
BP	GO:0007275	multicellular organism development	IEP	HCCA
MF	GO:0008094	ATP-dependent activity, acting on DNA	IEP	HCCA
BP	GO:0009451	RNA modification	IEP	HCCA
MF	GO:0009982	pseudouridine synthase activity	IEP	HCCA
MF	GO:0016721	oxidoreductase activity, acting on superoxide radicals as acceptor	IEP	HCCA
MF	GO:0016853	isomerase activity	IEP	HCCA
MF	GO:0016866	intramolecular transferase activity	IEP	HCCA
BP	GO:0019751	polyol metabolic process	IEP	HCCA
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	HCCA
BP	GO:0043647	inositol phosphate metabolic process	IEP	HCCA
BP	GO:0044281	small molecule metabolic process	IEP	HCCA
BP	GO:0046165	alcohol biosynthetic process	IEP	HCCA
BP	GO:0046173	polyol biosynthetic process	IEP	HCCA
BP	GO:0048856	anatomical structure development	IEP	HCCA
BP	GO:0070525	tRNA threonylcarbamoyladenosine metabolic process	IEP	HCCA
BP	GO:0071103	DNA conformation change	IEP	HCCA
BP	GO:0072593	reactive oxygen species metabolic process	IEP	HCCA
MF	GO:0140097	catalytic activity, acting on DNA	IEP	HCCA
MF	GO:0140657	ATP-dependent activity	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR032819	TruB_C	223	265
IPR002501	PsdUridine_synth_N	72	222

External Links

No external refs found!

ZHONGCHA27905

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation