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  3. Camellia sinensis var. sinensis cv. 'Zhongcha 108'
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  5. ZHONGCHA37353

ZHONGCHA37353 (NFC04, MSI4, NFC4,...)


Aliases : NFC04, MSI4, NFC4, ATMSI4, ACG1, FVE

Description : WD-40 repeat-containing protein MSI4 & original description: none


Gene families : OG0022671 (OrthoFinder) Phylogenetic Tree(s): OG0022671_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ZHONGCHA37353
Cluster HCCA: Cluster_202

Target Alias Description ECC score Gene Family Method Actions
FUDINGDABAI35840 NFC04, FVE,... WD-40 repeat-containing protein MSI4 & original... 0.06 OrthoFinder
HUANGJINYA35311 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 & original... 0.03 OrthoFinder
JINXUAN40654 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 & original... 0.03 OrthoFinder
LJCHANGYE41572 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 & original... 0.03 OrthoFinder
TIEGUANYIN25772 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 & original... 0.03 OrthoFinder
ZIJUAN00599 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 & original... 0.04 OrthoFinder
CSS0004671.1 CSS0004671,... WD-40 repeat-containing protein MSI4 & original... 0.03 OrthoFinder
FUDINGDABAI35840 NFC04, FVE,... WD-40 repeat-containing protein MSI4 & original... 0.06 OrthoFinder
HUANGJINYA35311 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 & original... 0.03 OrthoFinder
JINXUAN40654 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 & original... 0.03 OrthoFinder
LJCHANGYE41572 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 & original... 0.03 OrthoFinder
TIEGUANYIN25772 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 & original... 0.03 OrthoFinder
ZIJUAN00599 NFC04, MSI4,... WD-40 repeat-containing protein MSI4 & original... 0.04 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000045 autophagosome assembly IEP HCCA
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP HCCA
MF GO:0004055 argininosuccinate synthase activity IEP HCCA
MF GO:0004806 triglyceride lipase activity IEP HCCA
MF GO:0004827 proline-tRNA ligase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005669 transcription factor TFIID complex IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
CC GO:0005741 mitochondrial outer membrane IEP HCCA
CC GO:0005869 dynactin complex IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006082 organic acid metabolic process IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006364 rRNA processing IEP HCCA
BP GO:0006367 transcription initiation at RNA polymerase II promoter IEP HCCA
BP GO:0006433 prolyl-tRNA aminoacylation IEP HCCA
BP GO:0006520 amino acid metabolic process IEP HCCA
BP GO:0006525 arginine metabolic process IEP HCCA
BP GO:0006526 arginine biosynthetic process IEP HCCA
BP GO:0006606 protein import into nucleus IEP HCCA
BP GO:0006913 nucleocytoplasmic transport IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007005 mitochondrion organization IEP HCCA
BP GO:0007033 vacuole organization IEP HCCA
BP GO:0007165 signal transduction IEP HCCA
BP GO:0008053 mitochondrial fusion IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008483 transaminase activity IEP HCCA
MF GO:0008649 rRNA methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009064 glutamine family amino acid metabolic process IEP HCCA
BP GO:0009084 glutamine family amino acid biosynthetic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
BP GO:0016042 lipid catabolic process IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016072 rRNA metabolic process IEP HCCA
MF GO:0016298 lipase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
BP GO:0019069 viral capsid assembly IEP HCCA
BP GO:0019752 carboxylic acid metabolic process IEP HCCA
MF GO:0019900 kinase binding IEP HCCA
MF GO:0019901 protein kinase binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
CC GO:0031966 mitochondrial membrane IEP HCCA
CC GO:0031968 organelle outer membrane IEP HCCA
BP GO:0034504 protein localization to nucleus IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0042802 identical protein binding IEP HCCA
MF GO:0042803 protein homodimerization activity IEP HCCA
BP GO:0043436 oxoacid metabolic process IEP HCCA
MF GO:0046983 protein dimerization activity IEP HCCA
BP GO:0048284 organelle fusion IEP HCCA
MF GO:0051087 protein-folding chaperone binding IEP HCCA
BP GO:0051169 nuclear transport IEP HCCA
BP GO:0051170 import into nucleus IEP HCCA
MF GO:0060590 ATPase regulator activity IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
MF GO:0070840 dynein complex binding IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
CC GO:0090575 RNA polymerase II transcription regulator complex IEP HCCA
MF GO:0140102 catalytic activity, acting on a rRNA IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
BP GO:1905037 autophagosome organization IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 115 149
IPR001680 WD40_repeat 185 220
IPR001680 WD40_repeat 277 314
IPR001680 WD40_repeat 233 265
No external refs found!