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  3. Camellia sinensis var. sinensis cv. 'Zhongcha 108'
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  5. ZHONGCHA37747

ZHONGCHA37747


Description : DEAD-box ATP-dependent RNA helicase 35 & original description: none


Gene families : OG0015461 (OrthoFinder) Phylogenetic Tree(s): OG0015461_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ZHONGCHA37747
Cluster HCCA: Cluster_550

Target Alias Description ECC score Gene Family Method Actions
GWHTACFB031972 No alias DEAD-box ATP-dependent RNA helicase 35 & original... 0.05 OrthoFinder
JINXUAN46288 No alias DEAD-box ATP-dependent RNA helicase 35 & original... 0.03 OrthoFinder
ZIJUAN02024 No alias DEAD-box ATP-dependent RNA helicase 35 & original... 0.06 OrthoFinder
GWHTACFB031972 No alias DEAD-box ATP-dependent RNA helicase 35 & original... 0.05 OrthoFinder
JINXUAN46288 No alias DEAD-box ATP-dependent RNA helicase 35 & original... 0.03 OrthoFinder
ZIJUAN02024 No alias DEAD-box ATP-dependent RNA helicase 35 & original... 0.06 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005730 nucleolus IEA Interproscan
BP GO:0006364 rRNA processing IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0016787 hydrolase activity IEA Interproscan
BP GO:0017038 protein import IEA Interproscan
MF GO:0034511 U3 snoRNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP HCCA
BP GO:0000372 Group I intron splicing IEP HCCA
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000376 RNA splicing, via transesterification reactions with guanosine as nucleophile IEP HCCA
BP GO:0000921 septin ring assembly IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0004812 aminoacyl-tRNA ligase activity IEP HCCA
CC GO:0005739 mitochondrion IEP HCCA
CC GO:0005856 cytoskeleton IEP HCCA
CC GO:0005940 septin ring IEP HCCA
BP GO:0006418 tRNA aminoacylation for protein translation IEP HCCA
BP GO:0007010 cytoskeleton organization IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0016874 ligase activity IEP HCCA
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP HCCA
MF GO:0016879 ligase activity, forming carbon-nitrogen bonds IEP HCCA
MF GO:0016881 acid-amino acid ligase activity IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0031106 septin ring organization IEP HCCA
CC GO:0032156 septin cytoskeleton IEP HCCA
BP GO:0032185 septin cytoskeleton organization IEP HCCA
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0043021 ribonucleoprotein complex binding IEP HCCA
MF GO:0043022 ribosome binding IEP HCCA
BP GO:0043038 amino acid activation IEP HCCA
BP GO:0043039 tRNA aminoacylation IEP HCCA
CC GO:0043227 membrane-bounded organelle IEP HCCA
CC GO:0043231 intracellular membrane-bounded organelle IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
BP GO:0070925 organelle assembly IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
BP GO:0140694 non-membrane-bounded organelle assembly IEP HCCA
InterPro domains Description Start Stop
IPR011545 DEAD/DEAH_box_helicase_dom 166 345
IPR001650 Helicase_C 381 488
No external refs found!