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  3. Camellia sinensis var. sinensis cv. 'Zhongcha 108'
  4. Sequence
  5. ZHONGCHA58326

ZHONGCHA58326 (SVR7)


Aliases : SVR7

Description : Pentatricopeptide repeat-containing protein At4g16390, chloroplastic & original description: none


Gene families : OG0016447 (OrthoFinder) Phylogenetic Tree(s): OG0016447_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: ZHONGCHA58326
Cluster HCCA: Cluster_81

Target Alias Description ECC score Gene Family Method Actions
ANJIBAICHA02937 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder
CSA017800.1 SVR7, CSA017800 Pentatricopeptide repeat-containing protein At4g16390,... 0.02 OrthoFinder
ECHA61618 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.05 OrthoFinder
FUDINGDABAI56137 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder
GWHTACFB022813 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.07 OrthoFinder
GWHTAZTZ025059 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.05 OrthoFinder
HUANGJINYA55383 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.07 OrthoFinder
LJCHANGYE63660 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder
TIEGUANYIN42371 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.05 OrthoFinder
ANJIBAICHA02937 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder
CSA017800.1 SVR7, CSA017800 Pentatricopeptide repeat-containing protein At4g16390,... 0.02 OrthoFinder
CSS0012721.1 CSS0012721, SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.11 OrthoFinder
ECHA61618 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.05 OrthoFinder
FUDINGDABAI56137 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.03 OrthoFinder
GWHTACFB022813 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.07 OrthoFinder
GWHTAZTZ025059 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.05 OrthoFinder
HUANGJINYA55383 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.07 OrthoFinder
LJCHANGYE63660 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.06 OrthoFinder
TIEGUANYIN42371 SVR7 Pentatricopeptide repeat-containing protein At4g16390,... 0.05 OrthoFinder

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
CC GO:0005739 mitochondrion IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003678 DNA helicase activity IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003724 RNA helicase activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity IEP HCCA
MF GO:0003880 protein C-terminal carboxyl O-methyltransferase activity IEP HCCA
MF GO:0003887 DNA-directed DNA polymerase activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004112 cyclic-nucleotide phosphodiesterase activity IEP HCCA
MF GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity IEP HCCA
MF GO:0004115 3',5'-cyclic-AMP phosphodiesterase activity IEP HCCA
MF GO:0004176 ATP-dependent peptidase activity IEP HCCA
MF GO:0004222 metalloendopeptidase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004671 protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity IEP HCCA
MF GO:0004784 superoxide dismutase activity IEP HCCA
MF GO:0004857 enzyme inhibitor activity IEP HCCA
MF GO:0004864 protein phosphatase inhibitor activity IEP HCCA
MF GO:0004865 protein serine/threonine phosphatase inhibitor activity IEP HCCA
CC GO:0005869 dynactin complex IEP HCCA
CC GO:0005875 microtubule associated complex IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006195 purine nucleotide catabolic process IEP HCCA
BP GO:0006198 cAMP catabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006310 DNA recombination IEP HCCA
BP GO:0006353 DNA-templated transcription termination IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006479 protein methylation IEP HCCA
BP GO:0006481 C-terminal protein methylation IEP HCCA
BP GO:0006694 steroid biosynthetic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006801 superoxide metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006974 DNA damage response IEP HCCA
MF GO:0008081 phosphoric diester hydrolase activity IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
MF GO:0008171 O-methyltransferase activity IEP HCCA
MF GO:0008186 ATP-dependent activity, acting on RNA IEP HCCA
BP GO:0008202 steroid metabolic process IEP HCCA
BP GO:0008213 protein alkylation IEP HCCA
MF GO:0008276 protein methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009154 purine ribonucleotide catabolic process IEP HCCA
BP GO:0009166 nucleotide catabolic process IEP HCCA
BP GO:0009187 cyclic nucleotide metabolic process IEP HCCA
BP GO:0009214 cyclic nucleotide catabolic process IEP HCCA
BP GO:0009261 ribonucleotide catabolic process IEP HCCA
CC GO:0009360 DNA polymerase III complex IEP HCCA
MF GO:0009378 four-way junction helicase activity IEP HCCA
BP GO:0009892 negative regulation of metabolic process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0010340 carboxyl-O-methyltransferase activity IEP HCCA
BP GO:0010563 negative regulation of phosphorus metabolic process IEP HCCA
BP GO:0010605 negative regulation of macromolecule metabolic process IEP HCCA
BP GO:0010921 regulation of phosphatase activity IEP HCCA
BP GO:0010923 negative regulation of phosphatase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016229 steroid dehydrogenase activity IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016721 oxidoreductase activity, acting on superoxide radicals as acceptor IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
MF GO:0016872 intramolecular lyase activity IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
BP GO:0018410 C-terminal protein amino acid modification IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019212 phosphatase inhibitor activity IEP HCCA
BP GO:0019220 regulation of phosphate metabolic process IEP HCCA
BP GO:0019439 aromatic compound catabolic process IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
BP GO:0031324 negative regulation of cellular metabolic process IEP HCCA
BP GO:0031399 regulation of protein modification process IEP HCCA
BP GO:0031400 negative regulation of protein modification process IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032515 negative regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
MF GO:0033764 steroid dehydrogenase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0034061 DNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034655 nucleobase-containing compound catabolic process IEP HCCA
BP GO:0035303 regulation of dephosphorylation IEP HCCA
BP GO:0035304 regulation of protein dephosphorylation IEP HCCA
BP GO:0035305 negative regulation of dephosphorylation IEP HCCA
BP GO:0035308 negative regulation of protein dephosphorylation IEP HCCA
CC GO:0042575 DNA polymerase complex IEP HCCA
BP GO:0043086 negative regulation of catalytic activity IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
BP GO:0043666 regulation of phosphoprotein phosphatase activity IEP HCCA
BP GO:0043687 post-translational protein modification IEP HCCA
BP GO:0044092 negative regulation of molecular function IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
BP GO:0044270 cellular nitrogen compound catabolic process IEP HCCA
BP GO:0045936 negative regulation of phosphate metabolic process IEP HCCA
BP GO:0046058 cAMP metabolic process IEP HCCA
BP GO:0046434 organophosphate catabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0046700 heterocycle catabolic process IEP HCCA
MF GO:0050661 NADP binding IEP HCCA
BP GO:0050790 regulation of catalytic activity IEP HCCA
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051174 regulation of phosphorus metabolic process IEP HCCA
BP GO:0051248 negative regulation of protein metabolic process IEP HCCA
BP GO:0051336 regulation of hydrolase activity IEP HCCA
BP GO:0051346 negative regulation of hydrolase activity IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
MF GO:0051998 protein carboxyl O-methyltransferase activity IEP HCCA
BP GO:0052652 cyclic purine nucleotide metabolic process IEP HCCA
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP HCCA
BP GO:0065009 regulation of molecular function IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0072523 purine-containing compound catabolic process IEP HCCA
BP GO:0072593 reactive oxygen species metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
BP GO:1901136 carbohydrate derivative catabolic process IEP HCCA
BP GO:1901292 nucleoside phosphate catabolic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1901361 organic cyclic compound catabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 319 366
IPR002885 Pentatricopeptide_repeat 180 225
IPR002885 Pentatricopeptide_repeat 390 435
IPR002885 Pentatricopeptide_repeat 256 276
IPR002885 Pentatricopeptide_repeat 287 315
IPR002885 Pentatricopeptide_repeat 450 495
No external refs found!