CSA001003.1 (CSA001003)

Aliases : CSA001003

Description : 50S ribosomal protein L17, chloroplastic & original description: none

Gene families : OG0007370 (OrthoFinder) Phylogenetic Tree(s): OG0007370_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: CSA001003.1
Cluster	HCCA: Cluster_74

Target	Alias	Description	ECC score	Gene Family Method
ANJIBAICHA04071	No alias	50S ribosomal protein L17, chloroplastic & original...	0.02	OrthoFinder
ECHA05702	No alias	50S ribosomal protein L17, chloroplastic & original...	0.14	OrthoFinder
FUDINGDABAI01010	No alias	50S ribosomal protein L17, chloroplastic & original...	0.22	OrthoFinder
GWHTACFB005057	No alias	50S ribosomal protein L17, chloroplastic & original...	0.09	OrthoFinder
GWHTAZTZ033268	No alias	50S ribosomal protein L17, chloroplastic & original...	0.06	OrthoFinder
HUANGJINYA01941	No alias	50S ribosomal protein L17, chloroplastic & original...	0.03	OrthoFinder
JINXUAN13293	No alias	50S ribosomal protein L17, chloroplastic & original...	0.1	OrthoFinder
LJCHANGYE24021	No alias	50S ribosomal protein L17, chloroplastic & original...	0.08	OrthoFinder
TIEGUANYIN08945	No alias	50S ribosomal protein L17, chloroplastic & original...	0.07	OrthoFinder
ZHONGCHA07921	No alias	50S ribosomal protein L17, chloroplastic & original...	0.12	OrthoFinder
ZIJUAN49330	No alias	50S ribosomal protein L17, chloroplastic & original...	0.08	OrthoFinder
ANJIBAICHA04071	No alias	50S ribosomal protein L17, chloroplastic & original...	0.02	OrthoFinder
CSS0012262.1	CSS0012262	50S ribosomal protein L17, chloroplastic & original...	0.05	OrthoFinder
ECHA05702	No alias	50S ribosomal protein L17, chloroplastic & original...	0.14	OrthoFinder
FUDINGDABAI01010	No alias	50S ribosomal protein L17, chloroplastic & original...	0.22	OrthoFinder
GWHTACFB005057	No alias	50S ribosomal protein L17, chloroplastic & original...	0.09	OrthoFinder
GWHTAZTZ033268	No alias	50S ribosomal protein L17, chloroplastic & original...	0.06	OrthoFinder
HUANGJINYA01941	No alias	50S ribosomal protein L17, chloroplastic & original...	0.03	OrthoFinder
JINXUAN13293	No alias	50S ribosomal protein L17, chloroplastic & original...	0.1	OrthoFinder
LJCHANGYE24021	No alias	50S ribosomal protein L17, chloroplastic & original...	0.08	OrthoFinder
TIEGUANYIN08945	No alias	50S ribosomal protein L17, chloroplastic & original...	0.07	OrthoFinder
ZHONGCHA07921	No alias	50S ribosomal protein L17, chloroplastic & original...	0.12	OrthoFinder
ZIJUAN49330	No alias	50S ribosomal protein L17, chloroplastic & original...	0.08	OrthoFinder

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	HCCA
MF	GO:0003723	RNA binding	IEP	HCCA
MF	GO:0003725	double-stranded RNA binding	IEP	HCCA
MF	GO:0004112	cyclic-nucleotide phosphodiesterase activity	IEP	HCCA
MF	GO:0004114	3',5'-cyclic-nucleotide phosphodiesterase activity	IEP	HCCA
MF	GO:0004115	3',5'-cyclic-AMP phosphodiesterase activity	IEP	HCCA
BP	GO:0006195	purine nucleotide catabolic process	IEP	HCCA
BP	GO:0006198	cAMP catabolic process	IEP	HCCA
BP	GO:0006534	cysteine metabolic process	IEP	HCCA
BP	GO:0006790	sulfur compound metabolic process	IEP	HCCA
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	HCCA
MF	GO:0008312	7S RNA binding	IEP	HCCA
MF	GO:0008962	phosphatidylglycerophosphatase activity	IEP	HCCA
BP	GO:0009069	serine family amino acid metabolic process	IEP	HCCA
BP	GO:0009092	homoserine metabolic process	IEP	HCCA
BP	GO:0009154	purine ribonucleotide catabolic process	IEP	HCCA
BP	GO:0009166	nucleotide catabolic process	IEP	HCCA
BP	GO:0009187	cyclic nucleotide metabolic process	IEP	HCCA
BP	GO:0009214	cyclic nucleotide catabolic process	IEP	HCCA
BP	GO:0009261	ribonucleotide catabolic process	IEP	HCCA
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	HCCA
BP	GO:0019346	transsulfuration	IEP	HCCA
BP	GO:0019439	aromatic compound catabolic process	IEP	HCCA
BP	GO:0034655	nucleobase-containing compound catabolic process	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0044270	cellular nitrogen compound catabolic process	IEP	HCCA
BP	GO:0046058	cAMP metabolic process	IEP	HCCA
BP	GO:0046434	organophosphate catabolic process	IEP	HCCA
BP	GO:0046700	heterocycle catabolic process	IEP	HCCA
CC	GO:0048500	signal recognition particle	IEP	HCCA
BP	GO:0050667	homocysteine metabolic process	IEP	HCCA
MF	GO:0051536	iron-sulfur cluster binding	IEP	HCCA
MF	GO:0051540	metal cluster binding	IEP	HCCA
BP	GO:0052652	cyclic purine nucleotide metabolic process	IEP	HCCA
BP	GO:0072523	purine-containing compound catabolic process	IEP	HCCA
BP	GO:1901136	carbohydrate derivative catabolic process	IEP	HCCA
BP	GO:1901292	nucleoside phosphate catabolic process	IEP	HCCA
BP	GO:1901361	organic cyclic compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000456	Ribosomal_L17	117	213

External Links

No external refs found!

CSA001003.1 (CSA001003)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation